Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20830 108 / 1e-28 FAD-binding Berberine family protein (.1.2) AT1G11770 106 / 8e-28 FAD-binding Berberine family protein (.1) AT4G20840 104 / 5e-27 FAD-binding Berberine family protein (.1) AT1G01980 103 / 8e-27 ATSEC1A FAD-binding Berberine family protein (.1) AT1G30710 98 / 9e-25 FAD-binding Berberine family protein (.1) AT1G34575 97 / 1e-24 FAD-binding Berberine family protein (.1) AT1G30740 91 / 2e-22 FAD-binding Berberine family protein (.1) AT1G30720 89 / 2e-21 FAD-binding Berberine family protein (.1) AT1G30730 86 / 1e-20 FAD-binding Berberine family protein (.1) AT1G30700 86 / 2e-20 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023366 [exp] 191 / 1e-60 AT1G11770 490 / 2e-171 FAD-binding Berberine family protein (.1) Lus10038440 [exp] 191 / 3e-59 AT1G11770 403 / 4e-135 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 107 / 4e-28 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10023365 [exp] 105 / 3e-27 AT1G11770 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 99 / 7e-25 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 97 / 3e-24 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 93 / 5e-23 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10023373 [exp] 89 / 4e-22 AT1G34575 283 / 2e-92 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 79 / 5e-18 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G462600 [exp] 133 / 2e-37 AT1G01980 658 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158500 [exp] 126 / 4e-35 AT1G01980 671 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 112 / 6e-30 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462532 [exp] 108 / 6e-30 AT1G30700 306 / 5e-102 FAD-binding Berberine family protein (.1) Potri.001G462300 [exp] 108 / 7e-30 AT1G30700 316 / 6e-106 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 110 / 5e-29 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 105 / 1e-27 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 105 / 1e-27 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 101 / 4e-26 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461700 [exp] 101 / 5e-26 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10038676 pacid=23143016 polypeptide=Lus10038676 locus=Lus10038676.g ID=Lus10038676.BGIv1.0 annot-version=v1.0 ATGGTTGAGTTAAGGAAGATAGGGTTTGTGTTCAACCTGTACGGTGGGAGGATGGATGAAATTGGGGAAATAGAGATGTTGTTTTGTCACCGGAAGGGGA ATCTATGGAAGATTCAATACTCTATAAGTTGGGAAGATGTAGGGGAGAAGGCAGAGAAGGATTACTTGAGCCATATCTGGAGGATTTGCAGTTACATAAC ATTGTTTGAAAGTAAGAATCTGAAGGGTGCGTATTTGAATTACATGAATTTGGATATTGACACCTGGCAACCTGGAAAAAATAGCTACAATGATGAGAAT TTGTATGGTGATAAGTACTTTAGTGTTTTTGAAATATTGCTGAAAATGAAGATTGATGTGGATCCTGGTAATTTATTTTGGAATAAATAG
AA sequence Show only first row Show all	>Lus10038676 pacid=23143016 polypeptide=Lus10038676 locus=Lus10038676.g ID=Lus10038676.BGIv1.0 annot-version=v1.0 MVELRKIGFVFNLYGGRMDEIGEIEMLFCHRKGNLWKIQYSISWEDVGEKAEKDYLSHIWRICSYITLFESKNLKGAYLNYMNLDIDTWQPGKNSYNDEN LYGDKYFSVFEILLKMKIDVDPGNLFWNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30710			FAD-binding Berberine family p...		Lus10038676 [exp]	0	1
AT1G67980		CCOAMT	caffeoyl-CoA 3-O-methyltransfe...		Lus10034584 [exp]	10.5	0.6468
AT2G37980			O-fucosyltransferase family pr...		Lus10028253 [exp]	18.3	0.6465
AT5G17760			P-loop containing nucleoside t...		Lus10041777 [exp]	24.4	0.5989
AT5G42230		SCPL41	serine carboxypeptidase-like 4...		Lus10023444 [exp]	30.2	0.6391
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10011977 [exp]	32.6	0.6349
AT1G67623			F-box family protein (.1)		Lus10030790 [exp]	35.0	0.6235
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10042640 [exp]	36.4	0.6356
AT3G54200			Late embryogenesis abundant (L...		Lus10039665 [exp]	49.8	0.5446
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	60.4	0.5724
					Lus10023587 [exp]	62.7	0.5724

Compare expression of checked genes

Lus10038676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.