Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22930 75 / 5e-16 Protein of unknown function (DUF1635) (.1) AT2G28690 69 / 6e-14 Protein of unknown function (DUF1635) (.1) AT3G44940 68 / 2e-13 Protein of unknown function (DUF1635) (.1) AT5G59760 66 / 2e-12 Protein of unknown function (DUF1635) (.1) AT2G28140 62 / 1e-11 Protein of unknown function (DUF1635) (.1) AT5G09940 59 / 3e-10 Protein of unknown function (DUF1635) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037944 [exp] 289 / 8e-99 AT5G22930 131 / 3e-37 Protein of unknown function (DUF1635) (.1) Lus10005884 [exp] 69 / 9e-14 AT2G28690 185 / 2e-58 Protein of unknown function (DUF1635) (.1) Lus10040864 [exp] 68 / 2e-13 AT2G28690 197 / 2e-63 Protein of unknown function (DUF1635) (.1) Lus10021419 [exp] 63 / 1e-11 AT5G22930 182 / 6e-58 Protein of unknown function (DUF1635) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032500 [exp] 114 / 2e-30 AT5G22930 75 / 5e-16 Protein of unknown function (DUF1635) (.1) Potri.010G229200 [exp] 89 / 4e-21 AT5G22930 77 / 2e-16 Protein of unknown function (DUF1635) (.1) Potri.009G027100 [exp] 77 / 3e-16 AT2G28690 156 / 3e-46 Protein of unknown function (DUF1635) (.1) Potri.001G235200 [exp] 72 / 1e-14 AT2G28690 166 / 3e-50 Protein of unknown function (DUF1635) (.1) Potri.006G256801 [exp] 72 / 2e-14 AT2G28690 162 / 1e-48 Protein of unknown function (DUF1635) (.1) Potri.004G216100 [exp] 70 / 6e-14 AT5G22930 140 / 8e-41 Protein of unknown function (DUF1635) (.1) Potri.009G006000 [exp] 70 / 7e-14 AT5G22930 134 / 3e-38 Protein of unknown function (DUF1635) (.1) Potri.008G010100 [exp] 69 / 2e-13 AT2G28690 147 / 4e-43 Protein of unknown function (DUF1635) (.1) Potri.018G024900 [exp] 44 / 5e-05 AT2G28690 121 / 4e-33 Protein of unknown function (DUF1635) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07795 [flax] [poplar] DUF1635 Protein of unknown function (DUF1635)
Representative CDS sequence Show only first row Show all	>Lus10038677 pacid=23143011 polypeptide=Lus10038677 locus=Lus10038677.g ID=Lus10038677.BGIv1.0 annot-version=v1.0 ATGGAGGAGCATTGCAGCCCTTTAGGCTGGACATCTTTCTACCCAGATGAGGTGATAGAGGAGCTGAAACAGTATGTTCACTACACATCAGCGTTGGAAA CCACAGTCCTGGCAACAAGAGAAGAATTGACCACCAGAGAATTGGAAATCCTTCACCTCAAACAGCTCCTCACCAAGACCACCAAGGAGAGGAATGACGC CAGAATTCAATGCCAGAGGCTAATGCTCGACAATTCCATCCTCCAGCAGCAACTCATCCATCTCAACAACCACAAAGTACAGGAGGAATCGCCACCAAGT CTCTGCCTCAAGCTAGAGGAATCACCGCCAGCGCCTCCCTTGGGGGCAGAGGAGGCAGTGGTGGTGGTTGCGATGGAGAGCGAACAATGCGGGTACTCAA CAGACGTGGTGGAGAAATTAGCGGCGGAGAGACACCTGCCGGAGAAAGGGAAGCTGTTGCAGGCGGTGAAAGAAGCAGGGCCGTTACTTCAGACGCTTAT GTTAGCAGGACCTCTGCCTCAGTGGCAAAACCCTCCTCCGCTTCACAATGTCGACATCCCACCCGTTACCATTTCCTCTGCTAATTCCTCTTCTTCTTCT CCGACAACAGCATCCTCCGCCAGATTATTGATACACCACGACTCTTTCAACAGTACTGCTAGTTTGGGCATCAAGAGGAGTTTTGACCACCTCTGTGACG ACTCTCCTCCTCCCAATTCTTCTTCCCCTTCTAACAAGTGCCAGAAGAAGCTTGATCTACCACGTTGA
AA sequence Show only first row Show all	>Lus10038677 pacid=23143011 polypeptide=Lus10038677 locus=Lus10038677.g ID=Lus10038677.BGIv1.0 annot-version=v1.0 MEEHCSPLGWTSFYPDEVIEELKQYVHYTSALETTVLATREELTTRELEILHLKQLLTKTTKERNDARIQCQRLMLDNSILQQQLIHLNNHKVQEESPPS LCLKLEESPPAPPLGAEEAVVVVAMESEQCGYSTDVVEKLAAERHLPEKGKLLQAVKEAGPLLQTLMLAGPLPQWQNPPPLHNVDIPPVTISSANSSSSS PTTASSARLLIHHDSFNSTASLGIKRSFDHLCDDSPPPNSSSPSNKCQKKLDLPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22930			Protein of unknown function (D...		Lus10038677 [exp]	0	1
AT3G25290			Auxin-responsive family protei...		Lus10038225 [exp]	4.9	0.9252
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10002130 [exp]	8.8	0.9282
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007584 [exp]	15.1	0.9237
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10033379 [exp]	17.0	0.9125
					Lus10043486 [exp]	17.6	0.9237
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10029259 [exp]	23.6	0.9026
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10027221 [exp]	25.6	0.9206
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10003188 [exp]	28.0	0.9038
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10027059 [exp]	28.6	0.9183
AT3G61750			Cytochrome b561/ferric reducta...		Lus10010120 [exp]	29.7	0.9227

Compare expression of checked genes

Lus10038677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.