Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04290 585 / 0 SPT5L, KTF1 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) AT4G08350 215 / 1e-56 GTA2, GTA02 global transcription factor group A2 (.1) AT2G34210 207 / 2e-54 Transcription elongation factor Spt5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037946 [exp] 1675 / 0 AT5G04290 731 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) Lus10028630 [exp] 213 / 6e-56 AT4G08350 1357 / 0.0 global transcription factor group A2 (.1) Lus10018928 [exp] 211 / 2e-55 AT4G08350 1358 / 0.0 global transcription factor group A2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032800 [exp] 760 / 0 AT5G04290 635 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) Potri.010G228766 [exp] 654 / 0 AT5G04290 606 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) Potri.004G162500 [exp] 228 / 1e-60 AT4G08350 1394 / 0.0 global transcription factor group A2 (.1) Potri.009G124200 [exp] 224 / 9e-60 AT4G08350 1372 / 0.0 global transcription factor group A2 (.1) Potri.010G228883 [exp] 45 / 0.0004 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0439 [flax] [poplar] NusG-like PF03439 [flax] [poplar] Spt5-NGN Early transcription elongation factor of RNA pol II, NGN section
Representative CDS sequence Show only first row Show all	>Lus10038680 pacid=23143130 polypeptide=Lus10038680 locus=Lus10038680.g ID=Lus10038680.BGIv1.0 annot-version=v1.0 ATGGACAAGGGTAAAGGAGTCGCCTCCTACGGCAAGCGCAAGAAAGGCGGCGCCGACGATGACAAGACCGGCACCGGATTCAAGAAGCGGAACCGCGACG TCCTTCGCTTCTTTGAGGATGCTGCTGATGTCGACGATGAAGACGACTTCGACTTCAGCGATTTGGACGATCTGAGCGATTTCGACGATGATGATTTTGA TGTCGAGTTAAAAATAAAGAAGGACCCTGAAAAATCACACAACATCCCTTTCATTCCAAAGGAGGAGCAGATGGACGAGGATGAATTTGATAAGATGATG GAGGAAAGATATAAGGATGGTGCTGGCTTTGCTACATACGCTGGAGATCCTTTTGAAGCAAAATTGGCAGAAAGGGATTCTGTTATGCCTTCTGCTAAGG ACCCAGCCATCTGGAAAGTTAAATGCATGATTGGACGTGAAAAACATTCTGCCTTCTGTCTCATGCAAAAATTCGTTGACTTGAAGTCCCTTGGTACCAA ACTGGACATAATTTCCGCATTCTCGATTGACCATGTGAAGGGTTATGTTTACATTGAAGCTGAACGGCAACACCATCTTGTTGAGGCATGCAAAGGGCTT TCAACAATATACACTTCCAGAGTGTCTACAGTTCCAGCGAACGATGTTACTCATTTGATATCTGTTCGGTGCAAACAGAGTCAAGTAACAAAGGGCATGT GGGCCCGTGTCAAGGCTGGGAATTATAAAGGAGACCTTGCACAGATTGTCGACGTAAATGATTCACGTAGAAGGGCACTAGTGAAGATAATTCCAAGGAT TGATCTACATGCTCTGGCTGAAAAATATGGTGGTGGAAAGGCACTTAAGAAAACTGATGTACCAGCTCCGAGGCTGATCAACTCGAATGAACTTGAGGAG TTACGTCCTCTTATCCAGTTTAGACGTGATCGCGACAGTGGCATGATGTTTGAGGTTCTTGATGGTTTGATGCTCAAGGATGGATTCTTGTACAAGAAAG TATCCTTGGATTCCTTAAATTGCTGGAGTATAATGCCCTCAAAAGAGGAGTTATTGAAGTTTGAATCTTCCGAGAATAATCAATCTGGCAATTTAGAATG GCTTACACAGATTTATGGTGCAAAAACGAAAAAGAAGGTAATTAGGAATGAGAAAGCTGGGGAGAAAGGTGAAAGTTCGTCTGGGACCGTAAGTCAAGCG ACCTTTGAGATATATGATTTTGTGTGCTTCCGGCGCAAAGAATTTGGTATTGTTGTTGGAATGGAGAAGGATGGTAATTGCAAGATTCTAAAAGAGGGAC CACAAGGACCTGTTGTCGTAACTATCGAACAGAAAGAAGCAAAAACTGGAGCTGCAGATATGAGATTTACTACGTTAGATCAGCATAAAAAGGTCATTTC TCACAATGATACTGTCAGGATTTTGGAGGGTCCATTGAAGGATAAGCAGGGAGTTGTAAAACAAATTTATCGAGGAATTGTCTTCATACATGATGATAAT GAGACCGAAAATGGTGGCTATTTTTGCTCAAGAGCTCAATTTTGTGAAAAAGTCAAGCTTTCTTCAGAGCTATTCAAAGAGAAGGGTGATGAATCTAGCT TTGGAGGTTTTGATGATGCCCCATCATCTCCAAAATCCCCTTTGTCACCTAAAGCACCATTCCAAGCGAGGGAAAATAATGATTTCAACAGGAGGGAAAA TGAAGCTATTTACTCCATTGGTCAGACCTTGAGAATAAAGTTAGGACCTCTGAAGGGCTACCTTTGTCGTGTATTGGCTGTACGGCGCAACGATGTTACT GTGAAACTTGATTCTCAACCGAAAACTCTTTCAGTAAAATTTGAGTATCTCTCTGACGTCCGTGGGAGGAGTTACAATGTTTCTGGCAGTGAGGATCCAG AGGCTGTTTCTTTCAAACCTTTTGATGCAATTGGAGATGATGGTGGTTCTGGAGGTTGGGCAAGTGGGGCTGGAACTTCGGGAGGAGCTGATGGGTGGAA CACTGGAGTCTTGACTGCAGAGAGGGATGCTTGGGCCAGCTCCTCTGCTCAAAAGCCTGATCCTGGTGGTCCATCAAATTCTAAAGACCAAGAAGATAAT GCTTGGGAGAAGAAATCGACTATTAATCAGAATTCTTCCTGGGGTGCAGCAGCTTCTGATGACAAAGCCATTACCAACACTGATCAAGCTAGTGGCTGGG GGAATAGTGGTGATGCTTGGGTCAAAGCTCCTATGAATGCTGTTAGCAGCGGAACATCTGATAGTTGGGGGAAAGCCGTTGACGAGAAAGTGACTGTGAA TCAGAGTTCTTGGGGTGCTTCTGCATCTGATGACAGACTTGCTAAGCCTGATAAAGCTTCTGGTTGGAGAAACAGTGGAGATGGCTTAAAAAATGCTTCT GCTGAAATAGGTGCTTGCAGTGAAGCATCAGATAGTTGGGGCAAAGCACTCGAATCCAGTAAAGATCAAACTGATGGTGCTTCTGCGTGGGACAAAGAAA AGAATGTTGCTGGAAATGCGACCAGCAGTTGCGGTGGTGGTTCCTGGGCCAAAGTAAATGAAGATGATAGTAATGGAGGAGTGTTGGAGAAGAATAAGAG CATGGGTGGAGATTGGGGAAATTCTCAGTCTTGTCAAGAGAACTCTAGCTGGAACCAGAAAACTAATGAATTTATGAAAGAGAAAGAGGCTAAGGAGCAT GGAGAAGCATGGAAGAGTGGGGATGGATCATCAAGCTGGGATAAGAAAACCGGTGCCTCAAGTGATGCCCAACCACTATCTGGTGATGCAGGTGGCACTG CAGATGGTACATGGGGTAAAAAGGCTGATTGGAAGTCTGGCTCTGGTGATGCCGGCCAAGGTTCCAGTTGGGGAAAGAAGAGCAATTGGAACTCTAGCTC TGCTGATGTTTCTGGGGATAATACAGAAAACTCTGAATGGGGTAAAAAGGCTGACTGGAGTTCTGGTTCTAATGATGCGAACACTAGTGCCAGCTGGGAA AAGAAGTCTGTCAATGTTGGCGGGAACACAAACTCTATGTGGGGTAAAAAGACTGATGGGAACTACGGGTTTGATGCTGTAGGCGGAGATTCTGGTGCTG GTAAAAAGGCAAACTGGGGCTCTGGCTCTAATGATGCTAGCATTGGTCCCAGCTGGGGAAAGAAATCTGTTGATATGGGTGATAACACCGACTCTACATG GGGTAAAAAGACTGATGGAAACTCAGGGTCTGATGATGTAGGCGGAAATGCTGGTTCTTCACGGGGTAAAAAGCCTAACTGGGGCTCTGGCTCCAACGAT GCTGACCAGGATTCCTGTTGGGGAAAGAAGAGCAATTGGAACTCTGGCTCTGACGAGGGAGGTGGAAGTGCAGGCTCTGGATGGAGTAAAAAGGGTGACT GGAAGTCTGGTTCTAATGATGCCAATGATTCTGGTTGGGGCAGCAAAGGCAGCTGGAATTCTGGAGTTGGGAATACAATCCAAGACTCTGCTGGAGGGGA CGCTGATGATGGAAATCATGGAAACTGGAGGGCTGGTTTTAGAGGTAGAGGGGACAGGGGTGGTTTTAGGGGTAGATGGGACAGAGGTGGTTTTGGAGGT AGAGGGGACAGAGGTGGTTTTGGAGGTAGAGGGGACAGAGGTGGTTTTGGAGGTAGAGGGGACAGAGGAGGGTTCAGGGGCAGAGGGGATAGAGGTGGTT TTGGAGGCCGAGGCAGATTTGGCGGAGGAGACAGTGATAATGCAGGTGACTCAGAGAGGGGAGGTTTTGGAGGCAGAGGCGGATTTGGTGGTAGAGGCAG AGGAAGTAGCTGGAATGATGGAAACAATTCTGGTGGTGGATGGAAAGGTAACAATGAAGGAGGCGGTTGGAATTGGAAAGGTAACAGTGAGAGAGGCGGT TGGAATGGTGGGGGTGGGGATAAGAAGAGTTGGAGCTCTTCTGGGAACGGTGGAAGTAACAATGGAACAGGAGGTGGGTGGAGTTCACAAGGTGGATCTG GGTGGGGGGAGCAGTTAGGAAAGGCTGCTGCTCAAGGTGAGAATGGTGGTGGTAAGGAAGGCGGGAGTAGTTGGAGCAAGGGAACCAGTTCAAGTGGCGA AGTTGGTGGAGGATGGGGTGCTAAAGGTGGTGCTGGGTGGGGTGAGGCTGGTGGTAGGGGGACGCCAGGAGCTAACAATGCTGAATCAAGTGGGGGTGGT GAACCTGGGAGCTCTTCCGCATGGGGGAAAAAGCCAGCAGAAACAAGCTCTTGGGGTGGTGGAAGTAAAGGAGGGGAGGGTAGTAAGGAATGA
AA sequence Show only first row Show all	>Lus10038680 pacid=23143130 polypeptide=Lus10038680 locus=Lus10038680.g ID=Lus10038680.BGIv1.0 annot-version=v1.0 MDKGKGVASYGKRKKGGADDDKTGTGFKKRNRDVLRFFEDAADVDDEDDFDFSDLDDLSDFDDDDFDVELKIKKDPEKSHNIPFIPKEEQMDEDEFDKMM EERYKDGAGFATYAGDPFEAKLAERDSVMPSAKDPAIWKVKCMIGREKHSAFCLMQKFVDLKSLGTKLDIISAFSIDHVKGYVYIEAERQHHLVEACKGL STIYTSRVSTVPANDVTHLISVRCKQSQVTKGMWARVKAGNYKGDLAQIVDVNDSRRRALVKIIPRIDLHALAEKYGGGKALKKTDVPAPRLINSNELEE LRPLIQFRRDRDSGMMFEVLDGLMLKDGFLYKKVSLDSLNCWSIMPSKEELLKFESSENNQSGNLEWLTQIYGAKTKKKVIRNEKAGEKGESSSGTVSQA TFEIYDFVCFRRKEFGIVVGMEKDGNCKILKEGPQGPVVVTIEQKEAKTGAADMRFTTLDQHKKVISHNDTVRILEGPLKDKQGVVKQIYRGIVFIHDDN ETENGGYFCSRAQFCEKVKLSSELFKEKGDESSFGGFDDAPSSPKSPLSPKAPFQARENNDFNRRENEAIYSIGQTLRIKLGPLKGYLCRVLAVRRNDVT VKLDSQPKTLSVKFEYLSDVRGRSYNVSGSEDPEAVSFKPFDAIGDDGGSGGWASGAGTSGGADGWNTGVLTAERDAWASSSAQKPDPGGPSNSKDQEDN AWEKKSTINQNSSWGAAASDDKAITNTDQASGWGNSGDAWVKAPMNAVSSGTSDSWGKAVDEKVTVNQSSWGASASDDRLAKPDKASGWRNSGDGLKNAS AEIGACSEASDSWGKALESSKDQTDGASAWDKEKNVAGNATSSCGGGSWAKVNEDDSNGGVLEKNKSMGGDWGNSQSCQENSSWNQKTNEFMKEKEAKEH GEAWKSGDGSSSWDKKTGASSDAQPLSGDAGGTADGTWGKKADWKSGSGDAGQGSSWGKKSNWNSSSADVSGDNTENSEWGKKADWSSGSNDANTSASWE KKSVNVGGNTNSMWGKKTDGNYGFDAVGGDSGAGKKANWGSGSNDASIGPSWGKKSVDMGDNTDSTWGKKTDGNSGSDDVGGNAGSSRGKKPNWGSGSND ADQDSCWGKKSNWNSGSDEGGGSAGSGWSKKGDWKSGSNDANDSGWGSKGSWNSGVGNTIQDSAGGDADDGNHGNWRAGFRGRGDRGGFRGRWDRGGFGG RGDRGGFGGRGDRGGFGGRGDRGGFRGRGDRGGFGGRGRFGGGDSDNAGDSERGGFGGRGGFGGRGRGSSWNDGNNSGGGWKGNNEGGGWNWKGNSERGG WNGGGGDKKSWSSSGNGGSNNGTGGGWSSQGGSGWGEQLGKAAAQGENGGGKEGGSSWSKGTSSSGEVGGGWGAKGGAGWGEAGGRGTPGANNAESSGGG EPGSSSAWGKKPAETSSWGGGSKGGEGSKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10038680 [exp]	0	1
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10037946 [exp]	1.7	0.9262
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10023119 [exp]	4.2	0.8982
AT3G06480			DEAD box RNA helicase family p...		Lus10009474 [exp]	8.1	0.8263
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10009273 [exp]	10.9	0.8491
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	15.0	0.8753
AT1G26370		RID1	RNA helicase family protein (....		Lus10036917 [exp]	19.0	0.8473
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	19.6	0.8777
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10031984 [exp]	20.5	0.8536
AT1G53050			Protein kinase superfamily pro...		Lus10025773 [exp]	20.5	0.8624
AT5G46070			Guanylate-binding family prote...		Lus10013965 [exp]	21.6	0.8535

Compare expression of checked genes

Lus10038680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.