Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60790 949 / 0 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) AT1G64550 422 / 2e-139 SCORD5, AtGCN20, AtABCF3, ABCF3, ATGCN3 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) AT3G54540 416 / 6e-137 ABCF4, ATGCN4 ATP-binding cassette F4, general control non-repressible 4 (.1) AT5G64840 218 / 3e-62 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT5G09930 209 / 6e-59 ABCF2, ATGCN2 ATP-binding cassette F2, ABC transporter family protein (.1) AT3G28415 67 / 2e-11 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28390 65 / 1e-10 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT1G28010 64 / 2e-10 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT2G36910 64 / 2e-10 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G27940 64 / 3e-10 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037947 [exp] 1055 / 0 AT5G60790 990 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10028810 [exp] 998 / 0 AT5G60790 1013 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10032431 [exp] 423 / 6e-140 AT1G64550 1244 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10029363 [exp] 413 / 6e-136 AT3G54540 1139 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10016184 [exp] 411 / 4e-135 AT3G54540 1141 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10023043 [exp] 422 / 1e-132 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10006804 [exp] 207 / 2e-58 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10005798 [exp] 207 / 4e-58 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10000013 [exp] 82 / 1e-18 AT3G54540 172 / 8e-52 ATP-binding cassette F4, general control non-repressible 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G007800 [exp] 984 / 0 AT5G60790 955 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.004G214300 [exp] 984 / 0 AT5G60790 944 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.010G254400 [exp] 420 / 2e-138 AT3G54540 1049 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.001G087300 [exp] 419 / 4e-138 AT1G64550 1145 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Potri.008G003300 [exp] 409 / 2e-134 AT3G54540 1060 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.007G080600 [exp] 217 / 1e-61 AT5G64840 936 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.005G084800 [exp] 210 / 3e-59 AT5G64840 983 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.011G133800 [exp] 67 / 2e-11 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 64 / 2e-10 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.015G059700 [exp] 63 / 4e-10 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10038681 pacid=23143046 polypeptide=Lus10038681 locus=Lus10038681.g ID=Lus10038681.BGIv1.0 annot-version=v1.0 ATGGTGTCAGACGCGAGCAAGAAGAAGGCGGCGCAGAAGAAGGCAGCGGCTGCGGCCAAGAGAGGAGGAAAGGCAGCTGCGTCCGCCGCGTCCTCTAAAG CAGCAGCTGATTCTTCTCAGAACGGCAGCGCTGTTGACAAGTTGTCTAATGGGATTGGAAACATGGAGATTTCCGATCGTAATTGTACGGGAGTCCTTTG CTCCCATCCTCTCTCCAGAGATATTCGGATTGAGTCTTTATCGGTGACATTTCATGGACATGATCTCATCGTCGATTCCTTGTTGGAGCTTAACTACGGA AGGCGATATGGCTTGCTTGGATTGAATGGTTGTGGAAAATCAACTTTGCTTACTGCAATTGGGTTTCGAGAGCTTCCAATTCCTGAACACATGGATATAT ATCACCTTACCAGAGAGATTGAAGCCTCTGACATGTCTTCACTTGAGGCTGTCATCAGCTGTGATGAGGAGAGGCTTAAACTGGAAAAAGAAGCTGAGCT GTTGGCAAGCCAGGATGATGGCGGCGGTGAAGCTCTTGAACGCATTTACGAGCGCTTGGATACTTTGGATGCATCAACAGCTGAGAAACGTGCAGCTGAA ATCTTATTTGGTCTTGGTTTCGACAAGCAGATGCAAGCAAAGAAGACCAGAGATTTCTCTGGTGGTTGGAGAATGAGGATTGCTCTTGCTAGAGCTTTGT TCATGAACCCCACTATCCTCTTGCTTGATGAGCCTACTAATCATCTTGATTTGGAAGCTTGTGTTTGGTTGGAGGAAATGCTGAAGAATTTCAACAGGAT CTTAGTAGTGGTTTCTCACTCGCAAGATTTTTTGAATGGTGTCTGCACAAATATCATACACATGCAGAACAAGACTTTGAAGATTTATTCAGGAAACTAT GATCAGTATGTTCAGACCCGTGGTGAGTTGGAAGAGAATCAGATGAAGCAGTACAGATGGGAACAGGAGCAAATTGCTAATATGAAGGAGTATATTGCTC GATTTGGGCATGGATCAGCTAAGTTGGCCCGTCAGGCACAGAGTAAGGAAAAGACTCTTGCTAAGATGGAGCGTGGTGGGCTAGCTGAGAAGGTAGTGAG AGACAAAGTCCTGGTGTTCCGCTTTGTTGATGTGGGAAAGCTTCCGCCACCTGTTCTTCAATTTGTTGAAGTGTCATTTGGGTATACACCTGAACATCTT ATCTACAAAAACATTGAATTTGGGGTTGATTTGGATTCTAGGGTAGCATTGGTTGGTCCGAATGGTGCTGGTAAGAGTACACTGTTGAAGTTGATGACTG GGGATTTGTTCCCTAGTGATGGCATGGTTAGAAGGCATAATCACCTGAGGATAGCACAATATCATCAGCACTTGGCTGAGAAGCTGGACTTGGATATGTC TGCTCTGCTATACATGATGAGAGAGTACCCAGGAAACGAGGAAGAGAAAATGAGGGGTGCGATTGGGAAGTTTGGGCTGACAGGGAAAGCGCAGGTGATG CCAATGAAGAACCTGTCAGATGGACAGAAGAGCAGGGTGATATTTGCTTGGTTGGCTTACAGGCAGCCACAGTTGCTGCTGCTGGATGAGCCAACAAATC ACTTGGATATTGAAACCATAGACTCTCTGGCAGAAGCATTGAACGAGTGGGACGGAGGGTTGGTGCTTGTTAGTCACGATTTCAGGCTGATAAACCAGGT AGCAAAGGAGATATGGGTTTGTGACAATCAGTCTGTTACACCATGGGCAGGTGACATCATGGATTTCAAGCAGCACCTCCGCAAGAAGGCCGGCTTATCA GAATGA
AA sequence Show only first row Show all	>Lus10038681 pacid=23143046 polypeptide=Lus10038681 locus=Lus10038681.g ID=Lus10038681.BGIv1.0 annot-version=v1.0 MVSDASKKKAAQKKAAAAAKRGGKAAASAASSKAAADSSQNGSAVDKLSNGIGNMEISDRNCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSLLELNYG RRYGLLGLNGCGKSTLLTAIGFRELPIPEHMDIYHLTREIEASDMSSLEAVISCDEERLKLEKEAELLASQDDGGGEALERIYERLDTLDASTAEKRAAE ILFGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEEMLKNFNRILVVVSHSQDFLNGVCTNIIHMQNKTLKIYSGNY DQYVQTRGELEENQMKQYRWEQEQIANMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFVDVGKLPPPVLQFVEVSFGYTPEHL IYKNIEFGVDLDSRVALVGPNGAGKSTLLKLMTGDLFPSDGMVRRHNHLRIAQYHQHLAEKLDLDMSALLYMMREYPGNEEEKMRGAIGKFGLTGKAQVM PMKNLSDGQKSRVIFAWLAYRQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAKEIWVCDNQSVTPWAGDIMDFKQHLRKKAGLS E

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10038681 [exp]	0	1
AT3G01820			P-loop containing nucleoside t...		Lus10035224 [exp]	2.0	0.8516
AT5G12260			unknown protein		Lus10036072 [exp]	4.6	0.8688
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10025466 [exp]	12.5	0.8091
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10038898 [exp]	13.2	0.8203
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026919 [exp]	14.6	0.8324
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012070 [exp]	17.8	0.8315
					Lus10001500 [exp]	22.4	0.7206
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10013836 [exp]	23.1	0.7651
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10004749 [exp]	23.6	0.8055
AT5G20520		WAV2	WAVY GROWTH 2, alpha/beta-Hydr...		Lus10011949 [exp]	23.7	0.7389

Compare expression of checked genes

Lus10038681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.