Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39210 788 / 0 Major facilitator superfamily protein (.1) AT2G28120 696 / 0 Major facilitator superfamily protein (.1) AT1G74780 311 / 5e-99 Nodulin-like / Major Facilitator Superfamily protein (.1) AT1G18940 302 / 8e-96 Nodulin-like / Major Facilitator Superfamily protein (.1) AT5G50520 300 / 7e-95 Major facilitator superfamily protein (.1) AT5G50630 300 / 7e-95 Major facilitator superfamily protein (.1) AT2G34355 296 / 2e-93 Major facilitator superfamily protein (.1) AT5G14120 297 / 4e-93 Major facilitator superfamily protein (.1) AT3G01930 296 / 1e-92 Major facilitator superfamily protein (.1.2) AT2G34350 286 / 1e-89 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037948 [exp] 1030 / 0 AT2G39210 839 / 0.0 Major facilitator superfamily protein (.1) Lus10037949 [exp] 926 / 0 AT2G39210 807 / 0.0 Major facilitator superfamily protein (.1) Lus10014640 [exp] 707 / 0 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10033790 [exp] 704 / 0 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10022614 [exp] 583 / 0 AT2G39210 652 / 0.0 Major facilitator superfamily protein (.1) Lus10021513 [exp] 527 / 0 AT2G39210 587 / 0.0 Major facilitator superfamily protein (.1) Lus10042170 [exp] 307 / 1e-97 AT1G74780 566 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10025123 [exp] 303 / 1e-95 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1) Lus10035203 [exp] 300 / 3e-94 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032901 [exp] 780 / 0 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1) Potri.006G122400 [exp] 728 / 0 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 659 / 0 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.002G133900 [exp] 646 / 0 AT2G39210 666 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 644 / 0 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.015G067000 [exp] 316 / 9e-101 AT1G74780 562 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.001G329100 [exp] 311 / 1e-98 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 310 / 5e-98 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.001G194500 [exp] 290 / 3e-95 AT2G28120 377 / 9e-130 Major facilitator superfamily protein (.1) Potri.012G098900 [exp] 302 / 5e-95 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10038682 pacid=23142990 polypeptide=Lus10038682 locus=Lus10038682.g ID=Lus10038682.BGIv1.0 annot-version=v1.0 ATGACAACGGCGGTCCCCGGCGGCCTGGCCGTCCACATAGTCACCGGACGGTGGTTCATGGTGTTCGCCTGCTTCCTAATCATGTCCGCCGCCGGCGCCA CATACATGTTTGGCCTCTACTCCGGCGACATCAAAACATCCCTCGGTTACAACCAAACAACCTTGAACCTCCTCAGCTTCTTCAAAGACCTCGGCGGCAA CGTCGGAATCCTCTCCGGCCTAATAGCCGAGGTCACCCCAACTTGGGTGGTCCTATCCATAGGCGCCGTGCTCAACTTCTTCGGATACTTCATGATCTGG CTCGCCGTCACCAAAAAAATTAATGCCGTTAAAGTATGGCACATGTGCCTCTACATCTGCATCGGCGCCAACTCCCAGGCGTTCGCCAACACGGGAGCGT TGGTCACGTGCGTCAAGAACTTCCCGGAGAGCCGCGGTGTCGTTTTGGGGATGTTGAAAGGCTACGTCGGCTTGAGCGGCGCAATCATCACCCAGATCTA CCACGGCTTATACGGCGACGATTCCAAGTCGTTGATTCTCCTAATCGCCTGGCTCCCCGCCGCCATTTCGTTCGCCTTTTTAAGGACGATTCGAGTCATG AAGGCGATCCGGCAGCCGAATGAGATCAAAGTTTTCTACAATTTCCTCTACATATCCCTCGGCCTTGCTGGATTTCTTACGCTGCTTATAATCCTCGAGA AGAAATTTAATTTCAATCGGAGCGAGTACGGTGGAAGCGCAGCTATGGTTCTCGTTTTGCTCTTCCTCCCTCTCGTTGTCTCCTTTATCGAGGAATACAA ACTATGGAGGGACAAAATGGTCATTCCAGAACACTCTCAACCCGAACCCATACCCAAACTGGTCAAACCCGTACCGGTCAACCAAATTGACCACGACATC GGCCAAAGAAATAGTGGCCGATCTTGCTGGAAGACGGTGTTCCAACCTCCTAGTAGAGGGGACGATTTCACCATCCTGCAAGCTTTGTTTAGTGTCGACA TGTTGGTACTATTCCTCGCCACAATCTGCGGCGTCGGAGGGACTTTGACGGCGATTGACAATTTGGGCCAGATCGGGACGTCGCTCGGGTACCCGAAGCG GAGCATCAGCACTTTCGTTTCCTTGGTGAGCATATGGAATTATTTGGGCCGGGTCGCTTCGGGTTTCCTTTCGGAGTATTTCTTGACCAAATACAAGTTT CCGCGTCCGTTAATGTTCACTTTAATCCTTCTCTTCTCCTGCGCGGGCCACCTATTGATCGCGTTCAACGTCCCCGACGGGCTTTACGCAGCATCGATTA TCATCGGGTTCAGTTTCGGGGCGCAGTGGCCGCTTCTGTTCGCCATTATTTCAGAGATATTCGGGCTCAAGTACTATTCCACGCTCTACAATTTCGGGTC GGTTGCCAGCCCGATCGGGGTGTACTTGCTCAATGTCCGGGTCGCGGGGTATCTATACGACAAGGAGGGGGAGAAGCAGCTGGCGGCAATGGGACTGGAG CGGAAAGCGGGTCAGGACCTCAACTGCGTGGGGACAGAGTGCTATAAACTGGCGTTCCTTATAATTACAGCGGTTACTCTGTTTGGAACTTTGGTGTCGC TGGTTTTGGTGATCAGGACTAGGAAGTTTTACCGGGGAGATATTTATAAAAGGTTCCGGGAGGCGGAGCAGGAAATAACGGTGGGCGCNNNNNNNNGTTG TTCGCCGCGAATGTGGGAAGTCGGTAAATGA
AA sequence Show only first row Show all	>Lus10038682 pacid=23142990 polypeptide=Lus10038682 locus=Lus10038682.g ID=Lus10038682.BGIv1.0 annot-version=v1.0 MTTAVPGGLAVHIVTGRWFMVFACFLIMSAAGATYMFGLYSGDIKTSLGYNQTTLNLLSFFKDLGGNVGILSGLIAEVTPTWVVLSIGAVLNFFGYFMIW LAVTKKINAVKVWHMCLYICIGANSQAFANTGALVTCVKNFPESRGVVLGMLKGYVGLSGAIITQIYHGLYGDDSKSLILLIAWLPAAISFAFLRTIRVM KAIRQPNEIKVFYNFLYISLGLAGFLTLLIILEKKFNFNRSEYGGSAAMVLVLLFLPLVVSFIEEYKLWRDKMVIPEHSQPEPIPKLVKPVPVNQIDHDI GQRNSGRSCWKTVFQPPSRGDDFTILQALFSVDMLVLFLATICGVGGTLTAIDNLGQIGTSLGYPKRSISTFVSLVSIWNYLGRVASGFLSEYFLTKYKF PRPLMFTLILLFSCAGHLLIAFNVPDGLYAASIIIGFSFGAQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGVYLLNVRVAGYLYDKEGEKQLAAMGLE RKAGQDLNCVGTECYKLAFLIITAVTLFGTLVSLVLVIRTRKFYRGDIYKRFREAEQEITVGXXXXCSPRMWEVGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39210			Major facilitator superfamily ...		Lus10038682 [exp]	0	1
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10035705 [exp]	10.0	0.6687
AT2G17280			Phosphoglycerate mutase family...		Lus10032820 [exp]	11.3	0.6058
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020950 [exp]	12.2	0.6360
AT5G57710			Double Clp-N motif-containing ...		Lus10008902 [exp]	19.7	0.5909
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10042339 [exp]	39.4	0.5991
AT5G58520			Protein kinase superfamily pro...		Lus10031294 [exp]	63.1	0.5545
AT1G53490			RING/U-box superfamily protein...		Lus10005260 [exp]	104.1	0.5328
AT1G15780			unknown protein		Lus10025449 [exp]	107.6	0.4967
AT2G30880			Pleckstrin homology (PH) domai...		Lus10027607 [exp]	112.4	0.4897
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006637 [exp]	138.5	0.5124

Compare expression of checked genes

Lus10038682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.