Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54940 496 / 9e-177 Papain family cysteine protease (.2) AT2G21430 400 / 5e-139 Papain family cysteine protease (.1) AT4G39090 390 / 8e-135 EMB3005, RD19A, RD19 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) AT4G16190 369 / 2e-126 Papain family cysteine protease (.1) AT1G20850 201 / 5e-61 XCP2 xylem cysteine peptidase 2 (.1) AT5G60360 199 / 2e-60 SAG2, AALP SENESCENCE ASSOCIATED GENE2, aleurain-like protease (.1.2.3) AT4G35350 198 / 6e-60 XCP1 xylem cysteine peptidase 1 (.1.2) AT3G45310 196 / 4e-59 Cysteine proteinases superfamily protein (.1.2) AT3G19400 191 / 2e-57 Cysteine proteinases superfamily protein (.1.2) AT5G43060 194 / 3e-57 Granulin repeat cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037951 [exp] 662 / 0 AT3G54940 451 / 6e-157 Papain family cysteine protease (.2) Lus10024303 [exp] 403 / 8e-140 AT4G39090 520 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10028797 [exp] 386 / 4e-133 AT4G39090 559 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10017487 [exp] 379 / 7e-131 AT4G39090 550 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10002103 [exp] 352 / 6e-121 AT4G39090 431 / 5e-153 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10017489 [exp] 214 / 3e-68 AT4G39090 314 / 5e-108 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10030722 [exp] 199 / 4e-60 AT4G35350 511 / 0.0 xylem cysteine peptidase 1 (.1.2) Lus10033428 [exp] 198 / 7e-60 AT3G45310 565 / 0.0 Cysteine proteinases superfamily protein (.1.2) Lus10013204 [exp] 196 / 5e-59 AT1G20850 509 / 0.0 xylem cysteine peptidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228400 [exp] 551 / 0 AT3G54940 501 / 6e-179 Papain family cysteine protease (.2) Potri.004G160300 [exp] 397 / 2e-137 AT4G39090 549 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.009G121300 [exp] 395 / 6e-137 AT4G39090 571 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.002G028700 [exp] 394 / 2e-136 AT4G39090 536 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.005G234000 [exp] 392 / 1e-135 AT4G39090 501 / 9e-179 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.005G256000 [exp] 199 / 3e-60 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1) Potri.007G047600 [exp] 197 / 3e-59 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.004G207600 [exp] 195 / 7e-59 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.002G005700 [exp] 192 / 1e-57 AT1G20850 531 / 0.0 xylem cysteine peptidase 2 (.1) Potri.011G066900 [exp] 194 / 8e-57 AT1G09850 366 / 7e-123 xylem bark cysteine peptidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10038684 pacid=23143138 polypeptide=Lus10038684 locus=Lus10038684.g ID=Lus10038684.BGIv1.0 annot-version=v1.0 ATGATCCCGCAAATCATTCGCCGCCGCCGGCCCAGAATTGCGACGACATTCTCTATCATCCTGCTCCATCTATTCCTCTTCTCGAGCTCAGCATCGGCCA CCACCGCAGTGCATCCGGAAGAAGATGCCAACATATTCCAAGTAACGGACGACACTCCCAACAACAACAATAGGAAATTCTTGAAAATCGGCATCGACCA CCTTCTGGGAACGGAGGAAAACTTCAAGCTGTTCGTTCAAAAGTACAACAAGGAGTATTCCGACAGCGAAGAGTATGCCCACCGCCTTGGGGTTTTCGCC CGGAACTTGGTGAAAGCGGCCGAGCATCAGGCGATGGACCCCACCGCCATCCACGGGGTTACTCCGTTCATGGACTTGACCGAGGAGGAGTTCCAGAGGT TGTATACCGGGGTTTCGATGATGGAGGGCAGAGCTGGCGAAGATGGTGTGTTTGCGGCGGAGGAGGCGGCGGAGACGATGGACACTAGCGGTTTGCCGGA TGAGTTTGACTGGAGGGACAAAGGAGCTGTAACCGACGTCAAGATGCAGGGGACATGTGGGTCATGCTGGGCTTTTAGCACGACGGGAGCAGTGGAAGGA GCTCATTTCTTGTCAACGGGGAAGCTGGTCAATCTCAGCGAACAGCAGCTCGTTGACTGTGATAATGTTTGTGACGAAAAGGAGAAGTCGGCTTGCGACA AAGGGTGCAATGGAGGGCTGATGACGAATGCGTACAGGTACTTAATCAAGGCTGGGGGGCTACAAGACGAAACTTCCTACCCTTACACGGGAAAGCCAGG GGAATGCCAGTTCGACCCTAACAAAATCGCTGTCAAAGTTGCCAATTTCTCAACCATTTCCCTTGACGAGAGCCAAATCGCAGCACATCTCGTAAACCAT GGACCCTTAGCAGTTGGGTTGAATGCTGTGTTCATGCAAACATACATAGGGGGTGTGTCGTGCCCTCTTATATGCGGGAAGAAGTTCATAAACCATGGGG TTCTGCTGGTTGGGTACGGGTCGAAAGGGTTCTCGCTTCTGAGGTTGGGATACAGACCATACTGGGTAATCAAGAACTCATGGGGGAAGCACTGGGGAGA GTCGGGGTACTACCGTATATGCAGGGGATATGGGATGTGCGGTGTTAACAGAATGGTCTCTGCTGTCGTCACTACTGTTTCTTAA
AA sequence Show only first row Show all	>Lus10038684 pacid=23143138 polypeptide=Lus10038684 locus=Lus10038684.g ID=Lus10038684.BGIv1.0 annot-version=v1.0 MIPQIIRRRRPRIATTFSIILLHLFLFSSSASATTAVHPEEDANIFQVTDDTPNNNNRKFLKIGIDHLLGTEENFKLFVQKYNKEYSDSEEYAHRLGVFA RNLVKAAEHQAMDPTAIHGVTPFMDLTEEEFQRLYTGVSMMEGRAGEDGVFAAEEAAETMDTSGLPDEFDWRDKGAVTDVKMQGTCGSCWAFSTTGAVEG AHFLSTGKLVNLSEQQLVDCDNVCDEKEKSACDKGCNGGLMTNAYRYLIKAGGLQDETSYPYTGKPGECQFDPNKIAVKVANFSTISLDESQIAAHLVNH GPLAVGLNAVFMQTYIGGVSCPLICGKKFINHGVLLVGYGSKGFSLLRLGYRPYWVIKNSWGKHWGESGYYRICRGYGMCGVNRMVSAVVTTVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54940			Papain family cysteine proteas...		Lus10038684 [exp]	0	1
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10026008 [exp]	4.2	0.9446
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10008627 [exp]	4.9	0.9269
AT5G18030			SAUR-like auxin-responsive pro...		Lus10027317 [exp]	6.6	0.9337
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10010841 [exp]	8.7	0.9375
AT3G06070			unknown protein		Lus10034044 [exp]	10.2	0.9250
AT5G23160			unknown protein		Lus10013437 [exp]	10.4	0.9242
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011997 [exp]	18.4	0.9400
AT3G08030			Protein of unknown function, D...		Lus10039602 [exp]	19.1	0.9199
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10040590 [exp]	26.1	0.9113
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10006413 [exp]	27.9	0.9097

Compare expression of checked genes

Lus10038684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.