Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 684 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 657 / 0 EFR EF-TU receptor (.1) AT3G47090 650 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 631 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 624 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 439 / 7e-138 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 405 / 2e-123 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 399 / 2e-121 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G44700 397 / 4e-120 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G07280 395 / 6e-120 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037955 [exp] 828 / 0 AT3G47570 462 / 6e-151 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 828 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 816 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 815 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 807 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 797 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 788 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 788 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 788 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 899 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 877 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 858 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 842 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 832 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 809 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 801 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 800 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 794 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 789 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038686 pacid=23143099 polypeptide=Lus10038686 locus=Lus10038686.g ID=Lus10038686.BGIv1.0 annot-version=v1.0 ATGGAGCTTCTCACTCTCTTCACCTCTGTCACTGCTGTCATCTTCATCAGCTCACTCTCGCCCGTAACCGCAGACCAAATTTCCCTCATAGATTTCAAGG CCAAAATCACCATCGACCCACTTCAAATCATGTCTTCCTGGAACTCCTCCACTCACTTCTGCAACTGGCCCGGAATCACCTGCGGCCGTAAGCACCAGAG AGTAACTGTTCTCGACCTCCGTTCCTCCCAACTCTCTGGCTCAATCTCCCCTGCCATCGGCAACCTCACCTTCCTCAGGCAGATTTACCTCCAAAACAAC AGTCTCACCGGCCGAATTCCACCGGATATCGGCCGGCTGAGCAGGCTGGACTGGCTGAACCTCCGAAACAACTCCCTTGGAGGCGAGATCCCACCTCAGG TATTCAACTGTTCCAACCTCATCCTCTTCACATTTGCTGGGAACTTTCTGTCGAGAAGAAGTCCTCAAGAGATTGGGTCTCTGTCGAAGCTGAAAAGGAT TGGTCTTGGCAACAACAGCTTGACGGGTAATATTCCTCAATCTGTAGGGAACATGTCTTCCCTTGAGGAACTTTATGCTTACAGGAATCATCTTGTGGGT ACTCTCCCTGTTGGTCTAGGTCAACTCAGGAACTTCTCGATTGTGTCTCTCTATGATAATAGCCTTTCAGGAATTATACCTGATTCAACTTTCAACAGTT CGACCTTGTTGGTTATTGATTTGGAACTCAACCAGCTGACTGGACAGCTCCCATCAGGTTTGGGGTCGACTTTTCTTCCACAGCTTCAGTTCATCTCCTT GGTTAATAATCGTTTCTTTGGGCCGATTCCAGCTTCTTTGTCGAATGCAACGGATTTGGGGACTATTCGGTTCGGTTTGAATCGTTTTTCGGGAAGGTTG CCTTCTCTTGCAAAGCTGAACAAGCTTCGATGGATGGCGATTGACTCCAACAATCTCGGAACCGGAATGGATGGCGATCTCGACTTCCTCACCACTCTAA CGAACAATACTGCTTTGGAAATCCTTACTCTCGATCACAATAACTTGGGTGGGCGAATTCCGGAGCAAATTGGAAATCTTTCGAGCAAGTTAACATTGCT GTTGGTGAGCAACAACAATCTATTTGGAGATATTCCACATGGAGTTGCAAATCTGATCAACCTACGGCAGTTTGAAGCTCATAACAATAATCTCTCAGGT ACTATTCCTTCAAGAATTGGAGAGCTTCAGAATATGGAAGGTTTGAACTTGGGAAACAATCAATTCTCTGGGTTAATTCCATCTTCGCTAGGAAATTTGA CTCGATTGGTAGAACTTCATCTCGAGACCAATCATCTTCAAGGAACGATCCCTCCTACTCTTGGGAATTGCAGGAGATTGATTGCCTTGAATATTTCTCA AAACTCACTTGAAGGTACTATACCCACGGAACTCCTTGATTTATCTTCCTTATCAATCTTCCTCGATTTATCCCAAAATCGTCTTTCGGGTTCCATTCCT CCCCAAGTCGGAAACCTGAAGAACCTAGGGTTGTTGAGACTTTCTGATAACATGCTGTCAGGAAAAATTCCCAACAGTCTTGGAAGTTGCATAAGATTAG AGGCCATACACATCGGCTCAAACTATTTGAACGACTCCATCCCTCGATCTCTAAGCTCGTTGAGAGGAATCAAACAGTTCAACGTCTCTCGCAACAATTT GTCAGGCCAGATTCCAGATTTTTTCCTGAGTTTCAGCTCATTGGAGTCCCTAGATTTGTCATACAACAATTTCCAAGGCCCAGTACCGAGTGAAGGCATT TTCAAGAACCCAAACACAACCATGATTTCTGGAAATGCAAATCTCTGTGGTGGTGTACCAGATTTCGGGCTGCAAGATTGCAATGATCAAAACACATCGG CAGGAGCAAGATCAAATGGGGATCTTAAACTGAAGATCATAATCTCCACAACGGTTCCCATCTCCGCATTACTCGCATTCGCTTGTTTCCTGATGTACCG GTCTAGAAAGAAACGTTCAGAGTCAACAACAATAAGTAGTCTCCTCAACAGAGAAATCCTGCAGGTTTCATACGAGACGCTCTTCAAAGTCACATGCGGA TTCTCTTCAGAAAACGAAATCGGCAGGGGAGGTTCAGGAACTGTGTATAAAGGAACTCTGGAAAACCCAGATCACCAAAGTGAATCCATCACAATTGCAG TCAAAGTTCTCAACCTCCTCCAACAAAGAGGTTACAAGAGCTTTCTTGCGGAATGCGAAGCGCTCAGGAACTCAAGGCACCGGAATCTGGTGAAGGTGGT GACAGTCTGCTCGAGTGTGGATCGCAACGGGAACGATTTCAGAGCAATCGTGTATGAGTTTGTGGAGAATGGGAGCCTGGAAGATTGGTTGACTGGTAAG AAAACTGGTGGTGGCTCATTAAATCTGATGCAGAGACTAAACATTGCTATCGATGTTGCTTACGCAATTGAGTATCTTCACAACGATTGTGAGATTCCAA TCATCCACTGCGATCTGAAACCGAGCAATATACTGCTGGACCATTCGATGACTGGTCAGGTCAGTGACTTTGGGTTGGCGAAGCTTGTTGGTAATATGAA TCAATGGAGCTCGATTGGAGTAAGGGGAACTGTCGGATATGCTCCTCCAGAATACGGGATGGGAAGCGAGATGTCAACTAAGGGAGACGTGTACAGCTAC GGGATCCTATTGCTGGAGATGTTCACAGGGAAGAATCCGACTGATGCAATGTTCAAAGACGGGTTGAGCCTTCACAACTTGGCAGAGTCTAAGCTTTGTT GCGTGACGGATATAGTCGACCCATCAATTCTCCTGGAGAAGGGGAAAGGTTCAGATAAAGATAATCATGCGTCAGTAGTTTATAACGAGTGCTTGAGTAT GATTCTGGGGATTGGAGTTTCTTGTTCAAAGGAGTTACCTCTGGAGCGGCTTGGGATTAGCATTGCTGTAAATAAACTGTGTCAGGTTAGGGAAACGATT AGAATCCTAGGCGGCGTTAAGAAATAA
AA sequence Show only first row Show all	>Lus10038686 pacid=23143099 polypeptide=Lus10038686 locus=Lus10038686.g ID=Lus10038686.BGIv1.0 annot-version=v1.0 MELLTLFTSVTAVIFISSLSPVTADQISLIDFKAKITIDPLQIMSSWNSSTHFCNWPGITCGRKHQRVTVLDLRSSQLSGSISPAIGNLTFLRQIYLQNN SLTGRIPPDIGRLSRLDWLNLRNNSLGGEIPPQVFNCSNLILFTFAGNFLSRRSPQEIGSLSKLKRIGLGNNSLTGNIPQSVGNMSSLEELYAYRNHLVG TLPVGLGQLRNFSIVSLYDNSLSGIIPDSTFNSSTLLVIDLELNQLTGQLPSGLGSTFLPQLQFISLVNNRFFGPIPASLSNATDLGTIRFGLNRFSGRL PSLAKLNKLRWMAIDSNNLGTGMDGDLDFLTTLTNNTALEILTLDHNNLGGRIPEQIGNLSSKLTLLLVSNNNLFGDIPHGVANLINLRQFEAHNNNLSG TIPSRIGELQNMEGLNLGNNQFSGLIPSSLGNLTRLVELHLETNHLQGTIPPTLGNCRRLIALNISQNSLEGTIPTELLDLSSLSIFLDLSQNRLSGSIP PQVGNLKNLGLLRLSDNMLSGKIPNSLGSCIRLEAIHIGSNYLNDSIPRSLSSLRGIKQFNVSRNNLSGQIPDFFLSFSSLESLDLSYNNFQGPVPSEGI FKNPNTTMISGNANLCGGVPDFGLQDCNDQNTSAGARSNGDLKLKIIISTTVPISALLAFACFLMYRSRKKRSESTTISSLLNREILQVSYETLFKVTCG FSSENEIGRGGSGTVYKGTLENPDHQSESITIAVKVLNLLQQRGYKSFLAECEALRNSRHRNLVKVVTVCSSVDRNGNDFRAIVYEFVENGSLEDWLTGK KTGGGSLNLMQRLNIAIDVAYAIEYLHNDCEIPIIHCDLKPSNILLDHSMTGQVSDFGLAKLVGNMNQWSSIGVRGTVGYAPPEYGMGSEMSTKGDVYSY GILLLEMFTGKNPTDAMFKDGLSLHNLAESKLCCVTDIVDPSILLEKGKGSDKDNHASVVYNECLSMILGIGVSCSKELPLERLGISIAVNKLCQVRETI RILGGVKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10038686 [exp]	0	1
AT5G04500			glycosyltransferase family pro...		Lus10037920 [exp]	3.2	0.9033
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022191 [exp]	15.6	0.9242
AT2G47730		GST6, ATGSTF5, ...	Arabidopsis thaliana glutathio...		Lus10037121 [exp]	17.3	0.8881
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10022722 [exp]	33.1	0.9029
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014498 [exp]	40.1	0.9003
AT3G07310			Protein of unknown function (D...		Lus10003162 [exp]	44.4	0.8980
AT4G20820			FAD-binding Berberine family p...		Lus10032943 [exp]	45.5	0.8804
AT1G30700			FAD-binding Berberine family p...		Lus10023375 [exp]	47.0	0.8942
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10001210 [exp]	51.6	0.8991
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10023271 [exp]	62.7	0.8937

Compare expression of checked genes

Lus10038686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.