Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24420 53 / 4e-09 HXXXD-type acyl-transferase family protein (.1) AT5G47950 49 / 1e-07 HXXXD-type acyl-transferase family protein (.1) AT3G30280 48 / 2e-07 HXXXD-type acyl-transferase family protein (.1) AT4G15390 48 / 3e-07 HXXXD-type acyl-transferase family protein (.1) AT3G26040 41 / 7e-05 HXXXD-type acyl-transferase family protein (.1) AT3G48720 38 / 0.0006 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G48930 38 / 0.0007 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037953 [exp] 173 / 3e-57 AT1G24420 67 / 5e-14 HXXXD-type acyl-transferase family protein (.1) Lus10037956 [exp] 125 / 2e-35 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10038689 [exp] 120 / 3e-33 AT3G26040 214 / 2e-64 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 99 / 2e-25 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 98 / 5e-25 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 64 / 1e-12 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 60 / 1e-11 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10017468 [exp] 53 / 5e-09 AT3G26040 207 / 5e-62 HXXXD-type acyl-transferase family protein (.1) Lus10028814 [exp] 52 / 9e-09 AT3G26040 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G033500 [exp] 119 / 8e-33 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 117 / 3e-32 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 107 / 1e-28 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 97 / 7e-25 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 68 / 3e-14 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 68 / 3e-14 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 62 / 4e-12 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 62 / 4e-12 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 62 / 4e-12 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 61 / 9e-12 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10038687 pacid=23143147 polypeptide=Lus10038687 locus=Lus10038687.g ID=Lus10038687.BGIv1.0 annot-version=v1.0 ATGCAGGGAGAGGAAGGGTTCGAAGCGATGTCGAGCAATTTCGAGCAGCTGGAAGGGCTGCTGTTTGGGAGTGAAGAAAAACCTGACATATTGGCGTTTA CCAGCTGGAACGGGACGGGAGTGGAGCGTCAGGATTTCGGGTGGGGTAGCCCGGTTCGGTTGGGGGTGATGGGAAAACCGGGTCCGGGTTTTAGGAACTT GACGGTGTTACTTGGTTCGACGGAGGGGAACAGGAGTATGGAAGCTCGGATAACGTTGGATGAGAAGAGAATGGCTTTGCGTCAACAGAATCCTGAGTTC TTGTCATTTGCTTCTTGTTCGTCTTCTTCTTCTGATGCTCCTCCTATTGTCTCAAGCCTTTGA
AA sequence Show only first row Show all	>Lus10038687 pacid=23143147 polypeptide=Lus10038687 locus=Lus10038687.g ID=Lus10038687.BGIv1.0 annot-version=v1.0 MQGEEGFEAMSSNFEQLEGLLFGSEEKPDILAFTSWNGTGVERQDFGWGSPVRLGVMGKPGPGFRNLTVLLGSTEGNRSMEARITLDEKRMALRQQNPEF LSFASCSSSSSDAPPIVSSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10038687 [exp]	0	1
AT4G16515		RGF6	root meristem growth factor 6,...		Lus10008506 [exp]	15.5	0.9174
					Lus10025807 [exp]	22.5	0.9122
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10022106 [exp]	27.2	0.9111
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012185 [exp]	32.7	0.9109
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10017469 [exp]	36.6	0.9062
AT2G20760			Clathrin light chain protein (...		Lus10018582 [exp]	38.2	0.9044
					Lus10019223 [exp]	42.9	0.9038
AT1G22690			Gibberellin-regulated family p...		Lus10009421 [exp]	44.7	0.9030
AT1G50310		ATSTP9	sugar transporter 9 (.1)		Lus10013441 [exp]	49.9	0.9008
					Lus10008326 [exp]	52.4	0.9008

Compare expression of checked genes

Lus10038687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.