Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 256 / 3e-75 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 255 / 5e-75 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 251 / 2e-73 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 218 / 1e-61 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 212 / 2e-59 EFR EF-TU receptor (.1) AT5G39390 203 / 4e-59 Leucine-rich repeat protein kinase family protein (.1) AT5G65710 161 / 3e-42 HSL2 HAESA-like 2 (.1) AT1G75820 149 / 6e-38 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G25930 148 / 1e-37 Protein kinase family protein with leucine-rich repeat domain (.1) AT2G24130 144 / 3e-36 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037954 [exp] 398 / 6e-137 AT3G47570 261 / 7e-84 Leucine-rich repeat protein kinase family protein (.1) Lus10038686 [exp] 335 / 3e-104 AT3G47570 752 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037955 [exp] 324 / 1e-103 AT3G47570 462 / 6e-151 Leucine-rich repeat protein kinase family protein (.1) Lus10014500 [exp] 295 / 1e-89 AT3G47570 663 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 285 / 3e-86 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 284 / 2e-85 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 280 / 1e-82 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10006445 [exp] 264 / 2e-80 AT3G47570 468 / 1e-152 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 270 / 1e-79 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 300 / 3e-91 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 280 / 4e-84 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G273001 [exp] 263 / 1e-78 AT3G47570 635 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 264 / 4e-78 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 259 / 2e-76 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 254 / 2e-74 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G069001 [exp] 251 / 9e-74 AT3G47570 676 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G037400 [exp] 252 / 1e-73 AT3G47570 622 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G114400 [exp] 245 / 3e-72 AT3G47570 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 245 / 2e-71 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10038688 pacid=23143041 polypeptide=Lus10038688 locus=Lus10038688.g ID=Lus10038688.BGIv1.0 annot-version=v1.0 ATGCTGTCAGGAAAAAATCCTGATGAGATCGGATCTCTGTCGAAGATGAAAAGGATCGAACTTGGCAACAATAGCTTGACGGGCAGTATTCCTAAATCTG TAGGGAACATGTCTTCTCTTGCGGAAATTTATGCATATAGGAATCATCTTCTGGGTACTCTACCTACTAGTATAAGACAATTGAGGAACTTCTCTGTTGT GTCTCTCTATGATAATAGCTTGTCAGGAACTATTCCTGATTCGACTTTCAATAGTTCCACTCTAGTTGAAATGGATCTAGAATTGAACCAGTTGACCGGA CAGCTTCTGTCGGGATTGGGTTTAACATTTCTTCTACAACTCGAGTACATTTCCTTGCTTAGTAATCACTTGTCCGGACAGATTCTGCCTACATTTTCGA ATGCCACAAACTTGGGAACCATTCGATTGGGTTTGAATCGGATTTCAGGAAGGTCTCCTTCTCTTGAAAGAATGAACGCTCTTCGATTGCTGGCGATCAA GTCCAACAATCTGGGAGCTGAAATGGAGTGTGACTTAGACTTCATAGTTAGTTTAACTAACAATAATGTGCTAGAGACCCTCACTCTAGATCATAATAGT TTCGGAGGACAACTTCCAAAACAAATTGGGATTCTTTCGAGGCAGTTGACTTCAATGTTCATGAGCGACAATCAATTGTATAGAGAGATTCTGAGTGGGA TTGAGAATCTGATCAACATGAGACAATTCGAGGCTCATAAGAATAATATTTCAGGTTCTGGAACTGTGTACAAAGGAACTCTGGAGTGTCGGGGTCATGA AACTACAGAACCAATTGTTGTTGCGGTCAAAGTTGTCAACCTCGCCCACCGAAGTGGTTACAAGAGCTTTGTTGCGGAGTGTGAAGCACTCAGGAAGTCC AGGCACCGAAATTTGGTGAAGGTAGTGACTGTGTGCTCCAGCGTGGATCACCATGGGAATGATTTCAAAGCAATTGTGTATGAGTTTATGGAGAATGGGA GTTTGGATGATTGGTTGCATAACAAGAGGGGTACTCGTACTAGTTCGTTGAATATGATACGAAGACTGAATATTGGTATTGATGTTGGATCGGCAATTGA GTATCTCAACAATGATGGTGAAATTCCAATTATACACTGCGATATGAAACCGAGCAATGGTTTATTGAATCATCAGATGACGGGTCGGGTGAGTGACTTG GGGCTGGCAAAGCTTGTTGCGGGTGCGGAAGGATGCAGGCCGTCTGCTGCAAACCAATGGAGCTCTATTGGGGTAAGAGGAACCCAATATGGGACAGGAG GCGAGATATCAAGTAAGGGAGATGTGTATAGCTACGGGATCCTGTTGTTAGAGATGTTCACGTGGAAGAGTCCGACTGATGAAATGTTCAAAGACGGGCT GAGCCATCGCGACTTAGTCGCTTCTAACCTTGCTTACCCGGATAGTGTAGTTGATCCATCACTCCTGGAAATGGTAAACAGTAATAGTGAAGAGAATCGG ACTTTGGTACTTTATAAAGAGTGTTTGGGTTCAATTTTGGGTTAA
AA sequence Show only first row Show all	>Lus10038688 pacid=23143041 polypeptide=Lus10038688 locus=Lus10038688.g ID=Lus10038688.BGIv1.0 annot-version=v1.0 MLSGKNPDEIGSLSKMKRIELGNNSLTGSIPKSVGNMSSLAEIYAYRNHLLGTLPTSIRQLRNFSVVSLYDNSLSGTIPDSTFNSSTLVEMDLELNQLTG QLLSGLGLTFLLQLEYISLLSNHLSGQILPTFSNATNLGTIRLGLNRISGRSPSLERMNALRLLAIKSNNLGAEMECDLDFIVSLTNNNVLETLTLDHNS FGGQLPKQIGILSRQLTSMFMSDNQLYREILSGIENLINMRQFEAHKNNISGSGTVYKGTLECRGHETTEPIVVAVKVVNLAHRSGYKSFVAECEALRKS RHRNLVKVVTVCSSVDHHGNDFKAIVYEFMENGSLDDWLHNKRGTRTSSLNMIRRLNIGIDVGSAIEYLNNDGEIPIIHCDMKPSNGLLNHQMTGRVSDL GLAKLVAGAEGCRPSAANQWSSIGVRGTQYGTGGEISSKGDVYSYGILLLEMFTWKSPTDEMFKDGLSHRDLVASNLAYPDSVVDPSLLEMVNSNSEENR TLVLYKECLGSILG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47110			Leucine-rich repeat protein ki...		Lus10038688 [exp]	0	1
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10028210 [exp]	3.0	0.8478
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000071 [exp]	5.1	0.8341
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000072 [exp]	7.1	0.8258
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10029839 [exp]	7.7	0.8189
					Lus10037463 [exp]	9.7	0.7837
					Lus10017855 [exp]	10.5	0.5549
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	18.5	0.7713
AT1G73190		ALPHA-TIP, TIP3...	ALPHA-TONOPLAST INTRINSIC PROT...		Lus10036187 [exp]	21.9	0.6046
AT1G75620			glyoxal oxidase-related protei...		Lus10024312 [exp]	22.4	0.7563
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021719 [exp]	23.0	0.7180

Compare expression of checked genes

Lus10038688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.