Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 207 / 5e-62 HXXXD-type acyl-transferase family protein (.1) AT1G24430 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1) AT1G24420 171 / 4e-48 HXXXD-type acyl-transferase family protein (.1) AT3G30280 160 / 2e-44 HXXXD-type acyl-transferase family protein (.1) AT4G15390 154 / 5e-42 HXXXD-type acyl-transferase family protein (.1) AT5G47950 149 / 4e-40 HXXXD-type acyl-transferase family protein (.1) AT5G47980 138 / 5e-36 HXXXD-type acyl-transferase family protein (.1) AT5G23970 137 / 7e-36 HXXXD-type acyl-transferase family protein (.1) AT4G15400 110 / 4e-26 HXXXD-type acyl-transferase family protein (.1) AT5G41040 96 / 4e-21 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037956 [exp] 838 / 0 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 509 / 1e-179 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 506 / 4e-178 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10017468 [exp] 304 / 6e-99 AT3G26040 207 / 5e-62 HXXXD-type acyl-transferase family protein (.1) Lus10028814 [exp] 300 / 2e-97 AT3G26040 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1) Lus10037952 [exp] 281 / 2e-92 AT1G24430 130 / 5e-35 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 252 / 4e-79 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 244 / 5e-76 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 239 / 4e-74 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034300 [exp] 494 / 1e-173 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 491 / 4e-172 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 458 / 2e-159 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 434 / 3e-150 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 274 / 1e-87 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 274 / 1e-87 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 270 / 5e-86 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 270 / 5e-86 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 268 / 3e-85 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 268 / 4e-85 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10038689 pacid=23143128 polypeptide=Lus10038689 locus=Lus10038689.g ID=Lus10038689.BGIv1.0 annot-version=v1.0 ATGGATGTAAGAGTCATTTCTAAGGAGCTAGTGAAGCCATCTTCCCCTGAAACAGCCAACGCCAAACCTCCCCACAAGCTATGCCTCTTCGACCAGCTCA CTCCCTTAACCTTCTCCCCACTCATCCTCTTCTACTCCACTCCTCCTCCAAGTTTCTCTATCGCTCACCTCAAGCTCTCCTTATCCCAAACTCTCGACAT TTACTACCCTTTCTCCGGCAGGACCACCTCCGCCAACTTGTTCGTCCAAAACTTCAACGCAGGACTCCCTGTCACTCTAGCTCAAACCCATTCCCGCCTC TCCCATTTTTTGAAAAACAACAACGACCCTCAACTCCTCAACCTTCTCCTCCCTCGTCAGCCCTTTCAGAAAGAGAACACAACCCTTGACGCCCCTGTTT TGGAGCTCCAGGTCTCTGTTTTCTCCTGCGGCGGTATCTCACTCGGTTGGGCTGCTTCCCATAAGCTAGTCGACGGAGCTACAATGAAAGCATTCCTCGA TACATTCACCGCGATTTCCAGGGGGAATCGAAACGACATCGTTTCCCCTGACTTCTTCACCGCGGCTGAGCTCTTCCCGCCTAGGGTTCCTTCCCCTGAT AGTTACCTCAACCTGATGGAGACGCTCTGGTTCACTGAAGGCGATTACTTAACGAGGCGATTCGTCTTCGATTCAAACGCGATTTCGAATTTGAGAGCCA TGGCTGCTTCCGGCGGAGTTAGGGTCACTAAGCTGTCGAGAGTGGAGGCGCTGTCGTGTTTCATATGGAAATGCTGTATGGCGGCGTCGAAGGCGGTGGG GAGGACTTCAAAGACGTCGATCCTAGTGGAGGCGGTGATTTTCCGTAGCCAGACGAATCCGCCGATGACGGAAGCGTCGATCGGGGACGTGTTCTGGTGG GGGACGGCGGTCGCGAACCCTAACGATGAATCAGAGAACGAGATGTCGGAGTTGGGGAAGCTGGTGAGCGAGGCGATCGGGCTTTACAAGAGCGAGTACG TGGGGGCGCTCCAGGGGGAAGACGGGTTCGAGTCGATGTCGGGTTATTTCGAGCAGCTGGAGGGTTTGTTCGAGGAGGAGAAACCGGATATATTCGCCTT CACCAGCTGGTCAGGGTTTGGGTTCACTGGTCAGGATTTCGGGTGGGGGAAACCGGCTTGGGTTACGGTTATGGGGAAAGTGGGTCGGGCGTTCAGGAAC CTGACGGTGTTCGTTGACTCAACGGAACGGAGAGGGAGCATTGAGGCTTGGGTCACTCTGGACCGGGAAAGGATGGCTGTTCTTGAAACCGATCCTAACT TCCTTGCCTTCGCTTCTACTAATCTTAGGGTTTCTAGCCTTTGA
AA sequence Show only first row Show all	>Lus10038689 pacid=23143128 polypeptide=Lus10038689 locus=Lus10038689.g ID=Lus10038689.BGIv1.0 annot-version=v1.0 MDVRVISKELVKPSSPETANAKPPHKLCLFDQLTPLTFSPLILFYSTPPPSFSIAHLKLSLSQTLDIYYPFSGRTTSANLFVQNFNAGLPVTLAQTHSRL SHFLKNNNDPQLLNLLLPRQPFQKENTTLDAPVLELQVSVFSCGGISLGWAASHKLVDGATMKAFLDTFTAISRGNRNDIVSPDFFTAAELFPPRVPSPD SYLNLMETLWFTEGDYLTRRFVFDSNAISNLRAMAASGGVRVTKLSRVEALSCFIWKCCMAASKAVGRTSKTSILVEAVIFRSQTNPPMTEASIGDVFWW GTAVANPNDESENEMSELGKLVSEAIGLYKSEYVGALQGEDGFESMSGYFEQLEGLFEEEKPDIFAFTSWSGFGFTGQDFGWGKPAWVTVMGKVGRAFRN LTVFVDSTERRGSIEAWVTLDRERMAVLETDPNFLAFASTNLRVSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10038689 [exp]	0	1
AT1G02570			unknown protein		Lus10025023 [exp]	2.2	0.8724
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10039775 [exp]	7.1	0.7904
					Lus10019006 [exp]	8.6	0.7257
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10022577 [exp]	12.5	0.8000
AT4G06744			Leucine-rich repeat (LRR) fami...		Lus10010049 [exp]	15.2	0.8334
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10002902 [exp]	17.7	0.7108
AT5G40250			RING/U-box superfamily protein...		Lus10014526 [exp]	17.7	0.7710
AT3G10080			RmlC-like cupins superfamily p...		Lus10014192 [exp]	20.0	0.8182
AT1G13970			Protein of unknown function (D...		Lus10026633 [exp]	22.6	0.7797
AT1G26140			unknown protein		Lus10017899 [exp]	27.1	0.7827

Compare expression of checked genes

Lus10038689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.