Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54880 79 / 7e-20 unknown protein AT3G15770 63 / 3e-13 unknown protein AT5G03440 60 / 1e-12 unknown protein AT5G25360 61 / 4e-12 unknown protein AT4G32342 57 / 5e-11 unknown protein AT1G15350 44 / 4e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037957 [exp] 180 / 2e-59 AT3G54880 73 / 1e-17 unknown protein Lus10013824 [exp] 70 / 3e-16 AT3G54880 108 / 1e-31 unknown protein Lus10026537 [exp] 57 / 1e-11 AT5G03440 97 / 5e-28 unknown protein Lus10002164 [exp] 46 / 9e-07 AT5G25360 174 / 3e-56 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G227800 [exp] 94 / 2e-25 AT3G54880 123 / 7e-38 unknown protein Potri.008G034600 [exp] 88 / 3e-23 AT3G54880 120 / 8e-37 unknown protein Potri.006G254000 [exp] 66 / 3e-14 AT5G25360 197 / 3e-65 unknown protein Potri.001G192700 [exp] 62 / 7e-13 AT5G25360 169 / 1e-54 unknown protein Potri.018G027800 [exp] 63 / 8e-13 AT5G25360 182 / 1e-58 unknown protein Potri.006G068600 [exp] 56 / 2e-10 AT5G25360 194 / 9e-64 unknown protein Potri.018G130900 [exp] 45 / 2e-06 AT5G25360 140 / 8e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038690 pacid=23142995 polypeptide=Lus10038690 locus=Lus10038690.g ID=Lus10038690.BGIv1.0 annot-version=v1.0 ATGGAGGTTAATGCTGGAAGTTCACTGTCCAAGAAGAACACTTTACAGAACCCTAAGGCTAAAACTGCTGCTGAAGCTGCCAAACCTGCAGCAAAAGATG TAAACCACCCTCGTGATTTTGTCAATCATGGTGCATTGTATTGGCATGAAAGTAGGAGGAAGTGGATCGGTGATCATTCTAGTAAAGTCCAAAGAACTAT AATACCAGATCCAATTATAAGCTGGTCAACAACCTATGAAGAATTACTTTCGACACATGAGCCGTTTGCAGAACCAATCTCTTTGCCTTGCGATATGTTC TTTTTGCAGCTCAGTGTCGTAAGTGGAGAGCTTGGAGATGCAGAGATATCATTAAAAAAGGATATGGGGAGGCTTCTGTTCTTTTGTATTCAGGATAATG CTGTGAAAGGTGCCAAGCCTTTCATGCAGTAA
AA sequence Show only first row Show all	>Lus10038690 pacid=23142995 polypeptide=Lus10038690 locus=Lus10038690.g ID=Lus10038690.BGIv1.0 annot-version=v1.0 MEVNAGSSLSKKNTLQNPKAKTAAEAAKPAAKDVNHPRDFVNHGALYWHESRRKWIGDHSSKVQRTIIPDPIISWSTTYEELLSTHEPFAEPISLPCDMF FLQLSVVSGELGDAEISLKKDMGRLLFFCIQDNAVKGAKPFMQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54880			unknown protein		Lus10038690 [exp]	0	1
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040149 [exp]	1.0	0.7654
AT5G02440			unknown protein		Lus10016560 [exp]	4.0	0.6967
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10041419 [exp]	4.9	0.7458
AT1G25550	GARP		myb-like transcription factor ...		Lus10041485 [exp]	9.2	0.7163
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10017343 [exp]	14.1	0.6421
AT5G50090			unknown protein		Lus10042139 [exp]	15.3	0.6558
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Lus10021488 [exp]	15.5	0.6054
AT3G49550			unknown protein		Lus10000077 [exp]	19.8	0.6002
AT1G65560			Zinc-binding dehydrogenase fam...		Lus10040589 [exp]	22.4	0.6498
AT5G06270			unknown protein		Lus10016982 [exp]	25.1	0.6700

Compare expression of checked genes

Lus10038690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.