Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10410 676 / 0 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT3G45010 610 / 0 SCPL48 serine carboxypeptidase-like 48 (.1) AT5G22980 568 / 0 SCPL47 serine carboxypeptidase-like 47 (.1) AT5G22960 177 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) AT1G15000 170 / 4e-47 SCPL50 serine carboxypeptidase-like 50 (.1) AT1G73300 160 / 1e-43 SCPL2 serine carboxypeptidase-like 2 (.1) AT1G73290 157 / 2e-42 SCPL5 serine carboxypeptidase-like 5 (.1) AT2G22920 152 / 9e-41 SCPL12 serine carboxypeptidase-like 12 (.1.2.3) AT1G73280 152 / 1e-40 SCPL3 serine carboxypeptidase-like 3 (.1) AT4G30810 152 / 3e-40 SCPL29 serine carboxypeptidase-like 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037958 [exp] 951 / 0 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10017466 [exp] 786 / 0 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041339 [exp] 558 / 0 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10041338 [exp] 371 / 1e-124 AT3G45010 460 / 3e-160 serine carboxypeptidase-like 48 (.1) Lus10037381 [exp] 368 / 3e-123 AT3G10410 456 / 2e-158 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10037380 [exp] 204 / 4e-63 AT3G45010 216 / 1e-68 serine carboxypeptidase-like 48 (.1) Lus10042334 [exp] 182 / 2e-51 AT1G15000 439 / 5e-152 serine carboxypeptidase-like 50 (.1) Lus10026331 [exp] 174 / 2e-48 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1) Lus10041000 [exp] 159 / 9e-43 AT1G15000 473 / 2e-165 serine carboxypeptidase-like 50 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034800 [exp] 735 / 0 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.010G227700 [exp] 729 / 0 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.004G215400 [exp] 613 / 0 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.005G060100 [exp] 182 / 2e-51 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.009G006701 [exp] 158 / 3e-46 AT3G45010 171 / 7e-52 serine carboxypeptidase-like 48 (.1) Potri.008G129800 [exp] 165 / 3e-45 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129850 [exp] 164 / 7e-45 AT1G15000 524 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.013G124900 [exp] 151 / 4e-40 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.018G103100 [exp] 151 / 6e-40 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.006G036500 [exp] 150 / 9e-40 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10038691 pacid=23143123 polypeptide=Lus10038691 locus=Lus10038691.g ID=Lus10038691.BGIv1.0 annot-version=v1.0 ATGGCCAAGGATAAGTCGAAAACGCTCAGGATCTTCCTCCTTCTATCGCTGATCGTCTGTTCCCGGGCAGCGGAGGACTTCGCCGCCATCGCCAAGTCCA GTTTCCCTTCCGTCCAGGCGGAGAAGTTCATTCGGGGTCTCAATCTCTTCCCCAAGCAGGATGTCAACATCATCCAAGACCTCGGCCAGGCTCCCACCGG GAAAAAGCTAGTGGAGAAGCCCCTCAGATTCCCTAATCTCGTTGGCGATGATTCCGAGGAGTTTGTCGTCGAGGATTTGGGCCACCACGCTGGTTATTAC AATATTGAGCATTCTTATGCTGCTAATAAGTGTTTGGCTGGTGACTGTTCATTTGAGTCGATTACTGTTTACAAAGTTAATCACAAGGCAAGGCTGACGG TTTTGAGGATGTTTGGTGGTAGGATGTTCTACTTCTTCTTCGAATCCCGCAATAGTAAGGACGACCCAGTTGTCATCTGGTTGACTGGGGGCCCGGGATG CAGCAGTGAGCTGGCCATATTCTATGAGAATGGCCCTTTCAGCATTGCAGATAACATGTCTCTTGTATGGAACAAGTTCGGCTGGGACCAGGCCTCAAAT CTTATTTATGTTGATCAGCCCACTGGAACAGGGTTTAGCTATAGCACTGATCGTCGTGACATTCGACACAATGAAGATGGAGTGAGTAATGACCTGTATG ACTTCTTGCAGGCTTTTTTCACAGAACATCCTGAACTTGCAAAGAATGACTTCTACATTACTGGTGAATCATATGCTGGCCACTACATTCCTGCTTTTGC TTCTCGTGTTCACAAAGGAAACAAGAATAATGAAGGGATCCACATAAATCTCAAGGGTTTCGCGATCGGCAATGGCCTTACAGATCCTGCAGTGCAGTAT AAGGCTTACCCAGATTTCGCGTTACAGAATGGGATAATCAAGGAATCACAGTACAAGTTGATTAATAAGGTGGTTCCAGCGTGTGAACTTGCGATTGAGC TGTGTGGGACTGATGGTACTGTCTCCTGTATGGCCTCATATTTTGTTTGCAATGGCATATTCAATGCTATTATTGGTATTGCTGGTAATATAAACTATTA TGACATCAGGAAGCAATGTGAAGGGAGCCTTTGCTACGACTTCTCAAACATGGAAAAATTTCTAAACTTGAATAACGTTAGGGAGTCTCTTGGGGTGGGC GATATAGACTTTGTGTCATGTAGTCCTACTGTTTATGAGGCCATGCTGGTGGACTGGATGAGGAACCTTGAAGTGGGCATTCCTGCTCTCCTTGAGGATG GCATCAAAATGCTCATATATGCCGGTGAATATGATCTCATCTGCAATTGGCTTGGTAACTCGCGATGGGTTGATGCTATGGAGTGGTCTGGTCAGAAAGA GTTTGTGTCATCTCCGGAGATATCCTTCGAGGTTGACGGTTCAGAAGCTGGAGTGCTAAAAACTCATGGACCCTTGGCCTTCCTCAAGGTCCGCGATGCT GGTCACATGGTTCCAATGGACCAGCCTAAGGCTGCATTGGAGATGCTGAAGAGGTGGACTCAAGGCGAGATATCTGATGTGCCGGCCAACAAATCGAATC TGGAGAAATTGGTTGCAGAATTCTGA
AA sequence Show only first row Show all	>Lus10038691 pacid=23143123 polypeptide=Lus10038691 locus=Lus10038691.g ID=Lus10038691.BGIv1.0 annot-version=v1.0 MAKDKSKTLRIFLLLSLIVCSRAAEDFAAIAKSSFPSVQAEKFIRGLNLFPKQDVNIIQDLGQAPTGKKLVEKPLRFPNLVGDDSEEFVVEDLGHHAGYY NIEHSYAANKCLAGDCSFESITVYKVNHKARLTVLRMFGGRMFYFFFESRNSKDDPVVIWLTGGPGCSSELAIFYENGPFSIADNMSLVWNKFGWDQASN LIYVDQPTGTGFSYSTDRRDIRHNEDGVSNDLYDFLQAFFTEHPELAKNDFYITGESYAGHYIPAFASRVHKGNKNNEGIHINLKGFAIGNGLTDPAVQY KAYPDFALQNGIIKESQYKLINKVVPACELAIELCGTDGTVSCMASYFVCNGIFNAIIGIAGNINYYDIRKQCEGSLCYDFSNMEKFLNLNNVRESLGVG DIDFVSCSPTVYEAMLVDWMRNLEVGIPALLEDGIKMLIYAGEYDLICNWLGNSRWVDAMEWSGQKEFVSSPEISFEVDGSEAGVLKTHGPLAFLKVRDA GHMVPMDQPKAALEMLKRWTQGEISDVPANKSNLEKLVAEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10038691 [exp]	0	1
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10029885 [exp]	1.4	0.8880
AT2G35120			Single hybrid motif superfamil...		Lus10018319 [exp]	3.5	0.8866
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10017458 [exp]	6.3	0.8703
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	7.9	0.8832
AT4G39820			Tetratricopeptide repeat (TPR)...		Lus10016067 [exp]	9.5	0.8632
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10040958 [exp]	10.2	0.8631
AT5G19860			Protein of unknown function, D...		Lus10013752 [exp]	11.2	0.8451
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	11.3	0.8617
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10004963 [exp]	11.7	0.8349
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	13.0	0.8460

Compare expression of checked genes

Lus10038691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.