Plant FIBer expression Database

Lus10038692 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10405 128 / 4e-37 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037959
[exp]
170 / 2e-52 AT3G10405 201 / 4e-64 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G034900
[exp]
135 / 1e-39 AT3G10405 217 / 1e-71 unknown protein
PFAM info
Representative CDS sequence
>Lus10038692 pacid=23143134 polypeptide=Lus10038692 locus=Lus10038692.g ID=Lus10038692.BGIv1.0 annot-version=v1.0
ATGGCTTTGCCAATGGGAATCTCGGCGGTCGGTAGCGGTTGTTCCAATTATATGCATCCGCCAGTTTGTTGGGTTCAATCTGCTTCATCCAGCCATCCAT
TTCCCTCCCACTTCTTCTCGCCGCACCCAAAGGCTGCTGCTATGGTTGGCTTTAATAATAATCTGAATCTCTCTGTGAAGAACAAATCCCTATCAAGTGC
TTCATCTGCATCAGGAATCCCGAATGAGTTGGATGAAGATTCCAAGTTCGTTCCCTTGAACGCTGATGACCCAGTGTTTGGTCCACCTGCAAGTCCCTGC
TCTACTTTCTTTCTTGTCGCACTTTTCAACAGATACTTTCTTGCAGAAAGGCATTCACTTATGCAGGTTGCCAAGTCTATGCCGCGGATTAGCTTCATAT
CTGGGCTTTCCGGAGAGGAGATGATGATGTTCATTGATGCTTTCCCAGAAGCCGGTCTTGAAGCAGCTGTTTTTGCAGCACTTGTTCCCAACAGTGCTGA
TAAACCCATTTACGAATTGGTGGAAGAAATCATGGGGGATCATGAAGTCATGGTGGGCGCTAATCCCTTCTTCAACTCAGCTGCTTTCATACAATCCACA
TAG
AA sequence
>Lus10038692 pacid=23143134 polypeptide=Lus10038692 locus=Lus10038692.g ID=Lus10038692.BGIv1.0 annot-version=v1.0
MALPMGISAVGSGCSNYMHPPVCWVQSASSSHPFPSHFFSPHPKAAAMVGFNNNLNLSVKNKSLSSASSASGIPNELDEDSKFVPLNADDPVFGPPASPC
STFFLVALFNRYFLAERHSLMQVAKSMPRISFISGLSGEEMMMFIDAFPEAGLEAAVFAALVPNSADKPIYELVEEIMGDHEVMVGANPFFNSAAFIQST

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G10405 unknown protein Lus10038692
[exp]
0 1
AT4G24470 GATA GATA25, TIFY1, ... Zinc-finger protein expressed ... Lus10042865
[exp]
6.1 0.7794
AT2G43040 NPG1 no pollen germination 1, tetra... Lus10017638
[exp]
7.7 0.7196
AT3G11620 BAS1 alpha/beta-Hydrolases superfam... Lus10016975
[exp]
8.7 0.7202
AT3G13690 Protein kinase protein with ad... Lus10001996
[exp]
15.0 0.7716
AT3G56160 Sodium Bile acid symporter fam... Lus10043384
[exp]
17.9 0.7429
AT1G60230 Radical SAM superfamily protei... Lus10029159
[exp]
19.7 0.7789
AT5G02250 ATMTRNASEII, RN... ribonucleotide reductase 1, EM... Lus10010842
[exp]
22.1 0.7505
AT5G35360 CAC2 acetyl Co-enzyme a carboxylase... Lus10042901
[exp]
25.5 0.7508
AT1G30520 AAE14 acyl-activating enzyme 14 (.1) Lus10009704
[exp]
26.8 0.7342
AT2G44590 ADL1D DYNAMIN-like 1D (.1.2.3) Lus10030928
[exp]
31.9 0.7511

Lus10038692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.