Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10380 1291 / 0 SEC8, ATSEC8 subunit of exocyst complex 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037962 [exp] 1616 / 0 AT3G10380 1147 / 0.0 subunit of exocyst complex 8 (.1) Lus10037963 [exp] 237 / 8e-73 AT3G10380 174 / 3e-51 subunit of exocyst complex 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G227100 [exp] 1483 / 0 AT3G10380 1484 / 0.0 subunit of exocyst complex 8 (.1) Potri.008G035300 [exp] 1473 / 0 AT3G10380 1475 / 0.0 subunit of exocyst complex 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF04048 [flax] [poplar] Sec8_exocyst Sec8 exocyst complex component specific domain
Representative CDS sequence Show only first row Show all	>Lus10038694 pacid=23143031 polypeptide=Lus10038694 locus=Lus10038694.g ID=Lus10038694.BGIv1.0 annot-version=v1.0 ATGCTCAGGATGGGGATTTTCGATGGATTGCCCGTTCCACCTGATAAAGAGTATTTAAGAGATGAGCTATCGAAGATTGATGAGAGCTGGGCTACTGCTC GGTTTGACTCGTTGCCTCATGTTGTTCATATTCTAACATCAAAAGATCGTGAAAGGGAACTCCACTATCTGAAGGAACAAAGAGATATAGTTGAGGATGT TGTGGACGAAGTTGTGCAAGCTTACCATGGTGGCTTTAATAAAGCTATTCAAAACTATTCTCAGATATTGAGGCTGTTCAGTGAGTCTTCTGAAAGCATT AGTACATTAAAAGTTGATTTGACGGAGGCAAAGAAGCTTCTTGGTGCTCGAAACAAGCAATTACATCAGTTATGGTATCGATCTGTCACACTAAGGCACA TCATTGCATTATTAGATCAAATTGAGAGCATATCTAAGGTTCCGGCGCATATCGAGAAACTCATTGCTGAAAAACAGTTCTATGCAGCCATTCAGTCACT TGTTCAGTCATCGTTGATGCTTGAACGGGAAGGCCTTCAGACGGTAGGTGCTCTTCAAGATGTAAAATCAGAGTTGTCCAAGTTGAGAGGACTGCTGTTT TACAGGATTGTGGAGGATTTACATGCACATCTTTACAATAAGGGAGAACACAGCTCAGTTGCCTCAACTATGGATGAAAGAGAAGATGAACTGCCAACCA TCACTGCTACAGCATATTCAATGAATGGATCACAATCCTTGTCTCGGAGGACCAGGATGATGAAAGGGGAACATCATGGACATACGGATGGATCTGTGAG TTCTTCATTTGAGGGACACGATGATGATGGTTCTCTTGAATTGCATGATGAGGCATCCTTGGATGGGCATACAGCATCAGCGAGAGGCAATGGTGGTGAT GCGATCACTAAGGACCCGAAAGCTGTTTCTAGACATGTACCTAGCTGGCTTTCAAACTCCACGCCTGATGAATTCATAGAAACTATAAAAAAGAGTGATG CTCCACTTCACGTAAAGTATTTGCAAACTCTGGTTGAGTGCCTCTACATGCTAGGAAAAGTAGCAGCTTCTGGTGCGATGATATGCCAAAGATTGCGCCC CACAATCCACGATATTATCACTTCCAAGATAAAAACTTATGCAGAACTTGTCAACTCTTCAAGGTCTGGAATTGGCCAGGCTGCTGAAACTGACTCTTCT GGTCTACATTTTATTAAAGTGCAAGTGGAAAGCTTCCAGCTGAGTAAGAAAAAGCATCAGAATGGGATATCACTTGCTGGGACTCTACTGCAAGTGAGCC CCGTGTCGCCTGTTATGGCTCCCACAGGCAAAGCGCAGACTGCTGCAAGAGATCTTCTTGATTCAGTATTGGATACTATTGTACGGATATTTGAAAATCA TGTAATTGTCGGAGAGCTGCTGGAATCAAAATTAGTTCATAGTGTTCCCTCACATCCTCCAAGTTCACGTGCAACTAAGGCTAATTTGAATCTAGACCCA GAAGGTTCTCAGGCTGGGGGATACAGTATGGGTTTCTCCTTGACTGTTTTACAGAGTGAATGTCAACAACTTATATGTGAAATACTGCGAGCAACTCCAG AAGCTGCATCAGCAGATGCTGCTTCACAGACTGCCAGACTTGCCAGCAAGGCCCCTTCCAAGGATAAAAGGAATGGGTCAGAAGATGGTCTTGCATTTGC ATTTCGATTCACAGATGCAACTATCTCTGTTCCTAACCAGGGTGTTGATCTCATTCGTCAGGGGTGGAATAGGAAGGGTCCAAATGTCTCGCAAGAAGGT TATGGCTCTGCTACTGTCTTGCCTGAGCAAGGCATATATCTAGCTGCATCTATTTATCGGCCTGTGGTGCAGTTTACAGATAAGATCGCTTCTATGCTGC CACAAAAACATTCCCAGCTTGGGAATGATGGGTTGCTGGCTTTCATGGAGAATTTTATAAAGGACCATTTTCTGCCAACCATGTTTGTGGACTACCGAAA AGCTGTACAGCAAGCTATATCAAGCCCTGCTGCATTTCGTCCAAGGGCTGCAACGGCAGCTGTTTATACTCCATCAGTCGAGAAAGGACGGCCTGTATTG CAGGGACTTTTGGCAATTGATTTATTGGCTAAAGAGGCAGTTCTTGAGAAGCAAAGCTACATGCTGATTGGGAGGTATGATATAGAGAAATTAATGCGAC GTGATCCTGCAAGCTCATGTTTACCTCATTCACTCGCGCATTCAAAGTCAGACATACCAACCAATGCTTCAGATGCTGAATCAGCGGGGATTGAGTCAGA GCTTGGTGACCTATTACTGAATTTGCGCCCAATCAGACAGGATAATCTAATTCGCGATGATAACAAACTCATTTTGCTAGCATCACTTAGCGATTCCTTG GAGCTTGGTCACTCCAATATGCGTGCAGCAAAGCAAATAGGCGAGAAAGGGAAGACTTTGGCTTCGTTTGCAGATGACTACAGAAAATTAGCAATTGACT GTCTCAAGGTTTTGCGAGTAGAGATGCAGTTGGAGACCATATTCCATTTGCAGGAAATGACAAATAGAGAGTACTTGGAGGATCAGGACGCAGAAGAGCC AGATGATTTTATCATCTCTCTCACTGCACAGATTACTCGCCGGGACGAGGAAATGGCGCATTTTGTTTCACCAGTGAAGCGAAATTATATATTTGGTGGA ATATGTAGCATCGCTGCAAGTGCATCTATCAAGGTTCTTGCTGATTTGAAGTCCATCAACTTGTTTGTTGTTCAGCAGATGTGCAGAAATTCAATTGCGT TGGAGCAGGCCCTTGCAGCTATTCCATCAATCAACAGTGAAGCTGTACAGCAGAGGCTGGACCGAGTCCGAACATATTACGAATTATTAAATATGCCCTT TGAGGCTTTGCTTGCTTTCATCGCGGAGCATGAACGCTTGTTTACAACTGTAGAGTATGGAAATCTTTTGAAGGTGAAGGTCCCGGGAAGGGAGATACCC CCAGACGCACAAGCGCGAATTCGAGACGTCTTATCTCGATAG
AA sequence Show only first row Show all	>Lus10038694 pacid=23143031 polypeptide=Lus10038694 locus=Lus10038694.g ID=Lus10038694.BGIv1.0 annot-version=v1.0 MLRMGIFDGLPVPPDKEYLRDELSKIDESWATARFDSLPHVVHILTSKDRERELHYLKEQRDIVEDVVDEVVQAYHGGFNKAIQNYSQILRLFSESSESI STLKVDLTEAKKLLGARNKQLHQLWYRSVTLRHIIALLDQIESISKVPAHIEKLIAEKQFYAAIQSLVQSSLMLEREGLQTVGALQDVKSELSKLRGLLF YRIVEDLHAHLYNKGEHSSVASTMDEREDELPTITATAYSMNGSQSLSRRTRMMKGEHHGHTDGSVSSSFEGHDDDGSLELHDEASLDGHTASARGNGGD AITKDPKAVSRHVPSWLSNSTPDEFIETIKKSDAPLHVKYLQTLVECLYMLGKVAASGAMICQRLRPTIHDIITSKIKTYAELVNSSRSGIGQAAETDSS GLHFIKVQVESFQLSKKKHQNGISLAGTLLQVSPVSPVMAPTGKAQTAARDLLDSVLDTIVRIFENHVIVGELLESKLVHSVPSHPPSSRATKANLNLDP EGSQAGGYSMGFSLTVLQSECQQLICEILRATPEAASADAASQTARLASKAPSKDKRNGSEDGLAFAFRFTDATISVPNQGVDLIRQGWNRKGPNVSQEG YGSATVLPEQGIYLAASIYRPVVQFTDKIASMLPQKHSQLGNDGLLAFMENFIKDHFLPTMFVDYRKAVQQAISSPAAFRPRAATAAVYTPSVEKGRPVL QGLLAIDLLAKEAVLEKQSYMLIGRYDIEKLMRRDPASSCLPHSLAHSKSDIPTNASDAESAGIESELGDLLLNLRPIRQDNLIRDDNKLILLASLSDSL ELGHSNMRAAKQIGEKGKTLASFADDYRKLAIDCLKVLRVEMQLETIFHLQEMTNREYLEDQDAEEPDDFIISLTAQITRRDEEMAHFVSPVKRNYIFGG ICSIAASASIKVLADLKSINLFVVQQMCRNSIALEQALAAIPSINSEAVQQRLDRVRTYYELLNMPFEALLAFIAEHERLFTTVEYGNLLKVKVPGREIP PDAQARIRDVLSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10038694 [exp]	0	1
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037962 [exp]	1.4	0.9642
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	3.7	0.9582
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028092 [exp]	6.0	0.9525
AT4G39420			unknown protein		Lus10005786 [exp]	6.3	0.9505
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10008949 [exp]	6.7	0.9404
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10028197 [exp]	6.9	0.9177
AT1G31730			Adaptin family protein (.1)		Lus10035684 [exp]	7.1	0.9455
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	8.5	0.9337
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	8.8	0.9431
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10017680 [exp]	9.7	0.9246

Compare expression of checked genes

Lus10038694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.