Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54870 967 / 0 AtKINUc, CAE1, ARK1, MRH2 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) AT1G12430 538 / 4e-176 AtKINUa, ARK3, PAK phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) AT1G01950 537 / 6e-176 AtKINUb, ARK2 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) AT3G63480 220 / 1e-62 ATP binding microtubule motor family protein (.1.2) AT1G59540 199 / 1e-52 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 199 / 3e-52 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 195 / 7e-51 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G10180 194 / 2e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55550 191 / 4e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 191 / 1e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037965 [exp] 1908 / 0 AT1G01950 920 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10007014 [exp] 529 / 4e-172 AT1G12430 1304 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10038007 [exp] 524 / 2e-170 AT1G01950 1272 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10009241 [exp] 520 / 4e-169 AT1G01950 1353 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10006670 [exp] 496 / 7e-161 AT1G12430 1143 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10036146 [exp] 204 / 1e-53 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 202 / 4e-53 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021340 [exp] 202 / 5e-53 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025304 [exp] 201 / 8e-53 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G227000 [exp] 1398 / 0 AT3G54870 938 / 0.0 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.014G070900 [exp] 548 / 6e-180 AT1G01950 1359 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.003G117000 [exp] 539 / 3e-176 AT1G12430 1348 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.001G115100 [exp] 535 / 5e-175 AT1G12430 1325 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.002G149400 [exp] 535 / 9e-175 AT1G01950 1360 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.008G035400 [exp] 351 / 1e-113 AT3G54870 345 / 8e-113 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.005G038900 [exp] 214 / 4e-60 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G082900 [exp] 202 / 3e-53 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.014G013300 [exp] 200 / 8e-53 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 200 / 2e-52 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10038696 pacid=23143105 polypeptide=Lus10038696 locus=Lus10038696.g ID=Lus10038696.BGIv1.0 annot-version=v1.0 ATGGCTTCCAATGCCAATGTCTCCAGAGCTTCTCCCAGACACCTTCAACAGCTCCGCACTCTTTCTCTATCCCCAGCTCATCTACCACTTGAGATGTTTC TGGATGATGGCCAGAATCTGATCCACATTCTAATTCTGCATTTCACATTTACCTTTGTAGCAGATTCCGGGAGAGTAAGAATTGCTGTTAGAGTACGACC AAGGAGTGCGGAGGAGGTCCGTTCAGATGCGGATTTTCCTGATTGTGTCGAGTTGCAACCAGAGCTTAAGCGATTAATATTGCGGAAGAACAACTGGAGT GCTGAGTCGTACAAATTTGATGAACTTTTTACCGAAACAGCCTCTCAAAGGCGTGTGTATGAAGCTGTTGCAAAGCCTGTTGTCGAGAGTGTATTGAGTG GATACAATGGGACAGTTATGGCTTACGGCCAAACGGGTACTGGGAAAACTTATACTATTGGCAGAATGGGGAAGGATGATGCCTCTCAGCGTGGTATCAT GGTTAGATCCCTAGAGGATATACTTTCTGGCACAACCTCTGCTTCTGATGTTGTCGAGATCTCTTATTTGCAGTTATACATGGAATCCATACAAGACTTG CTTGCACCTGAAAAGGTTAATATACATATCAATGATGACCCAAAGACCGGAGAAGTGTCAATACATGGTGCTACATTAGTTAAGCTCCGTGATCTCAGTC AATTTATGGAGCTAATGCGAATTGCGGAGGCAAACCGCCACGCAGCCAACACAAAGCAGAATACAGAATCTTCCCGGAGTCATGCAATTTTAGTGGTTTT TGTACGCAGATCTGTCCCCGAGAAAGTAGAGGATGAAACTAGTGTGGTCCCTGATATACCCCGAAGCAATGGCTTTCCTAGAGTTCGAAAAAGCAAGATG CTAATTGTTGATCTTGCCGGTTCTGAAAGAATAGACAAATCAGGCAGTGAAGGTCGCTTGCTTGAAGAGGCGAAGTTCATTAATCTTTCTCTCACTTCCC TTGGCAAATGTATAAATGCTTTGGCTGAAAACAGCCCACATATACCCACAAGGGATTCCAAGCTGACTAGATTACTTCGTGATTCTTTTGGAGGTTCTGC GAGAACTTCACTTATAGTAATGATTGGGCCATCTGCGCGGAATCATGCTGAGACCAGTAGCACAATTATGTTTGGGCAGCGGGCAATGAAAATTGTAAAT ATGGTGAAGCTCAAAGAAGAATTTGATTATGAGAGCCAGTCTCGGAAGCTACAGATTCAGGTAGATCACCTTACGGCAGAAATCGAAAGGGAACATAAAT TGAGAGTCAGTGAGAGACACGAGTGTGAAAGAAAAATTAAGGAATGTCGCGAATCTTTAACAAATGTTGCCACAAAGTCTGAGTTCCTGGAAAAGGAAAA GACTCATATGGAGGTGCAGTTAAAGGACATCTTAAGCGAACTGGACAGCCAAAAGGCTCAGAATTCTATCTTACGTGATAGAGTTGCACAGTTTGAAGTG AGCTTAAAGCTTAGCCAGCTTGAAAATTCCACATATCAAAAAGTGCTAGGGGAAACTACTCAGATGTACGAGGAGAAAATAGCGGAGTTTAAAAAGCAGC TAGAAAATGAACACGCTTCTTGTGAGAGTGCAGAGGAAGAGTTGAATATGATGAAGCAGCTCCTAAGTGATCGCCACACAGCAGTAAAGCAATACGAGAT TGAAAGTTCTACGTATCAGAAAGCACTTACAGAAAGCACTCAGATATACGATAAGAAGGTAGAAGAGTTAAATAAGCAGCTTGAAGAGGAGCGTGCTCAT GCTGCCAGTTGTGTGGAACAATTAGACTTCACTAACAAGCTTCTGATCGATTGCAAAAAATCAATCCAGAAGCATGAGGCAGAGAATGCTTCGTTCCAGA AAGCACTTGTAGAAACTGCACAAATGTATGAGAAAAAAATAGCAGAGCTAATTGAGCAACAAGATGAAGAGAAGGCTCGTTTGGTGGGAGTAAAATCTCC GAGTGACCAGCTAAACGTAATGCAGAATGCAGTGGATATGCATAAAGTGCCCAACCATCATGCAGGCACAACAACTGAGTTTAAATCCTTGAAGTCTGAT TACAAAGACGTGTTACAAGAAAAGGCAAGATTAGATGAAGAACTTCGTGAGGTGAAGCAAAGACTAGCAATGGAAGAGAAGCAAAGGAAGATTGTTGAAC ATGAACTGGCCAAAATAAAGAAGAACGCACCTGAAATTGATGATGACTATGAGGATAGGACATCCATGAAGGAAAACGTCGGTAAACCTTCTTCCGCACA TAAGCTTCCTGCGGGATTACACAAATCAACCCCTTTGCGTGAGTCAGTATCAGGTCAGAGAGCATCAATTGCAAAGATGTGCGAGGAAGTTGGACTTCAA AAGATATTGCAACTCTTGACATCTGATGACCCTGATGTGCAAATCCATGCTGTGAAAGTTGTTGCTAATCTTGCTTCCGAAGATATAAATCAAGAAAAGA TTGTGGAGGAAGGAGGCCTAGATGCTTTGCTCATGTTGCTAAAATCTTCACAAAACGCGACTATACTCCGAGTGGCTTCTGGTGCCATTGCCAACTTAGC TATGAACGATCTGAATCAAGGATTAATAATGAGCAAAGGTGGTGCTGAGCTTCTGGCTGACACGGCAATCAGAACAGACGATCCTCAGACCCTTAGAATG GTAGCTGGTGCACTTGCCAACTTATGCGGAAATGAGACGTTGCACATGATGTTGATGGAAGATGGAGGCATCAAAGCTCTCCTTGGAATGGCCAAGTGTG GAAACTTGGATGTAGTAGCACAGGTCGCCAGAGGAATGGCAAATTTTGCAAAGTGCGAATCCCGAGCCACCCTTCAAGGAAACAGAAAAGGACGTTCACT GTTGATGGATCAAGGTGCCTTGGAATGGCTGATTGCAAATTGCAGCACAACTTCAACCTCAACCAGACGTCACATTGAGCTTGCACTCTGCCATTTGGCC CAAAACAAGAGCAACGTTAGAGAGTTCATGTCGATGGGAGGGTCCAGAGAACTCGTTAGAATATCGAACGAATCAGCCAGAGAAGATATTCGAAACCTAG CAAGGAAAACGATGAAAATGCATCCAGAATTGTTGTAA
AA sequence Show only first row Show all	>Lus10038696 pacid=23143105 polypeptide=Lus10038696 locus=Lus10038696.g ID=Lus10038696.BGIv1.0 annot-version=v1.0 MASNANVSRASPRHLQQLRTLSLSPAHLPLEMFLDDGQNLIHILILHFTFTFVADSGRVRIAVRVRPRSAEEVRSDADFPDCVELQPELKRLILRKNNWS AESYKFDELFTETASQRRVYEAVAKPVVESVLSGYNGTVMAYGQTGTGKTYTIGRMGKDDASQRGIMVRSLEDILSGTTSASDVVEISYLQLYMESIQDL LAPEKVNIHINDDPKTGEVSIHGATLVKLRDLSQFMELMRIAEANRHAANTKQNTESSRSHAILVVFVRRSVPEKVEDETSVVPDIPRSNGFPRVRKSKM LIVDLAGSERIDKSGSEGRLLEEAKFINLSLTSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSARTSLIVMIGPSARNHAETSSTIMFGQRAMKIVN MVKLKEEFDYESQSRKLQIQVDHLTAEIEREHKLRVSERHECERKIKECRESLTNVATKSEFLEKEKTHMEVQLKDILSELDSQKAQNSILRDRVAQFEV SLKLSQLENSTYQKVLGETTQMYEEKIAEFKKQLENEHASCESAEEELNMMKQLLSDRHTAVKQYEIESSTYQKALTESTQIYDKKVEELNKQLEEERAH AASCVEQLDFTNKLLIDCKKSIQKHEAENASFQKALVETAQMYEKKIAELIEQQDEEKARLVGVKSPSDQLNVMQNAVDMHKVPNHHAGTTTEFKSLKSD YKDVLQEKARLDEELREVKQRLAMEEKQRKIVEHELAKIKKNAPEIDDDYEDRTSMKENVGKPSSAHKLPAGLHKSTPLRESVSGQRASIAKMCEEVGLQ KILQLLTSDDPDVQIHAVKVVANLASEDINQEKIVEEGGLDALLMLLKSSQNATILRVASGAIANLAMNDLNQGLIMSKGGAELLADTAIRTDDPQTLRM VAGALANLCGNETLHMMLMEDGGIKALLGMAKCGNLDVVAQVARGMANFAKCESRATLQGNRKGRSLLMDQGALEWLIANCSTTSTSTRRHIELALCHLA QNKSNVREFMSMGGSRELVRISNESAREDIRNLARKTMKMHPELL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038696 [exp]	0	1
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10010365 [exp]	7.3	0.7132
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10018892 [exp]	12.6	0.7380
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10042409 [exp]	16.7	0.7623
					Lus10033375 [exp]	21.1	0.6235
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10017889 [exp]	22.8	0.7349
AT5G55610			unknown protein		Lus10016608 [exp]	33.6	0.7125
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10038906 [exp]	36.7	0.6725
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10034354 [exp]	42.7	0.6990
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10004217 [exp]	43.8	0.7084
AT5G07400	FHA		forkhead-associated domain-con...		Lus10032515 [exp]	54.7	0.6588

Compare expression of checked genes

Lus10038696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.