Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55840 575 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G39140 432 / 5e-144 PDE328, SVR1 SUPPRESSOR OF VARIEGATION 1, PIGMENT DEFECTIVE 328, pseudouridine synthase family protein (.1) AT1G12775 236 / 5e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 238 / 7e-67 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 238 / 5e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 228 / 3e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 226 / 9e-64 RPF2 rna processing factor 2 (.1) AT1G62930 225 / 3e-63 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 227 / 4e-63 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G64320 226 / 6e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037968 [exp] 998 / 0 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037966 [exp] 620 / 0 AT2G39140 469 / 3e-165 SUPPRESSOR OF VARIEGATION 1, PIGMENT DEFECTIVE 328, pseudouridine synthase family protein (.1) Lus10007468 [exp] 246 / 5e-70 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017684 [exp] 243 / 8e-69 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 244 / 1e-68 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 243 / 1e-67 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026206 [exp] 240 / 6e-66 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 234 / 9e-65 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 229 / 3e-64 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G368700 [exp] 638 / 0 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G035500 [exp] 455 / 4e-153 AT2G39140 480 / 2e-169 SUPPRESSOR OF VARIEGATION 1, PIGMENT DEFECTIVE 328, pseudouridine synthase family protein (.1) Potri.009G069600 [exp] 255 / 2e-73 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 252 / 1e-72 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G217600 [exp] 254 / 3e-72 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 247 / 2e-71 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 248 / 1e-70 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 249 / 3e-70 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G147700 [exp] 243 / 1e-69 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271400 [exp] 241 / 2e-69 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0492 [flax] [poplar] S4 PF01479 [flax] [poplar] S4 S4 domain CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0649 [flax] [poplar] PseudoU_synth PF00849 [flax] [poplar] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Lus10038697 pacid=23143135 polypeptide=Lus10038697 locus=Lus10038697.g ID=Lus10038697.BGIv1.0 annot-version=v1.0 ATGGAAGAGTGTGGTTATGTTCCAAATGTGGTGACTTATAATACTATGCTCAATTGGTGTTGCAAGAAAGGGAGGTATAGGATTGCTTTTGATTTGATTG ATCAAATGGCGTCAAAAGGCATTCCAGCTTATGTGTTCACATATAATATGCTTATCGATGTTTTGTGCAGAAACAATAAGAGTCCAAAAGCTTATATGCT GTTGAAAACCATGAGGAATAGGAATATTCCTCCTAATGAAGTTACTTATAATACTCTAATTACTGGGTTTGTGAAAGAGGGGAAGGTTGGTGTTGCCACT CAAATTTTTGACGAGGTGTCAGTGCTTGGTCTTTCTTCGAATTCTCGTTCTTACAACTCTCTGATTGAGGGGCACTGTAACTTAGCAAATTTTGAAATAG CCTTTAGACTATCGAAATTGATGGAAGCGTCAGGGTTGAGACCAAGTGAAGTTAGCTATGGAACTCTCTTAAAGGGTTTGTGCAGACATAACAAACTGCA CTTGGCCAGGAGCCTTCTTGAGAGAATGAGGATCGAGAAGATGTCTGGTTGTATAGCATACACAACCATGATAGATGGGTTATGCCAGAATGGGTTGCTG GATGAAGCGGTGCAGTTGCTTAATAGTATGGCCAAGGACGGTGCAAATCCTGATATCATTACATTTTCTGTTCTTATAAATGGATTTTCCCGAGTTGGAA ATGTTGAAGGTGCAAAGGAAGTGGCATGCAGAATGTATAAACTTGGAATCAATCCAAACAATGTGCTATATGCTACTCTAATCTACAATCATTGCAGGGC GGGAAACATTACTCAGGCATTTAGGGTCTACGCAGCTATGAACTATGATGGACATAATGCCAGCCCTTTCATATGTAATATATTAGTCTCTTCTCTTTCG AGAAGTGGGATGTTACAAGCAGCAAAGGAGTTTATGCATCATATGCATAGAGTTGGTATTGCTCCAAACTCCATTACTTTTAACTCTCTTATCAATGGGT TTGCTAAATCAGGTAATGCTGTTGAAGCCTTCTCGGTGTTCGATGAAATGCTTCATTCAGGTCATCACCCATGCTCTTTCACTTTTAGTAGTCTGCTTAT GGGATTTTGTAAGGCTGGAAACTTAACGGAGGCAAGGAAGTTTTTGGATACACTGCACAGCATCCCATCTGCCGTTGACACAATAACGTATAATACAATA ATTGTTGAGGCCTGCAGACCAGGTAACTTGTCAGATGCGTTGACCCTCTTAAATGAAATGATGCAACACGATTTGATGCCTGATGAGTATACATACACCA TCATCCTTACTGGGTTGAGTAGGAAAGGTAAAATGGTTGCTACTCTTCTTTTCTATGGAAAGATCCTAGCAAAAGGAATCATGTCCACGAATCAAGCCAT CTATACGTGCTTGATTGATGGGTTTTTCAAGGCTGGCCAACCAAAGATAGCTTTGTATCTCTGTGAGGATATGGAGAAGAAAGGCCCAGGTATTGATATC ATTGCAACAAATGCTGTTACTGATGGATGTTCAAGGATGGGAAAAACAGCAGAAACCTTCCCGAAAACTCCCTCACATCCCTGCTCTTCTTCGGAATTCA ATATCACCTTCGCCCCTTCCAAGCCCAAGCCCAAACCTCAGCTCAATTTCACCGACGACAGCACCGGCCGCCAGGTTTTTGTTCCCTGGATTATTCGTGG TGAAGATGGAAACTTCCAGCTCCCCACTGAACCTCATCCTGCTCTCCTCCACGAGCTTGCTAATGCCAACACAGGGAAGCCTAAGAAGAAGGAGAAGCCG AAGAAGCCGCCTAGTCGACGCCTCACTGAAACTTCTGCTGCTCCTACTCCTGCTCCTACTCCGCCTCACTCCAAGGCTGCTCGAAGGTATTACAACGAGA ATTTCAGGGAGTCTGCTCAGCGTCTCAGCAAGGTTCTTGCAGCTGCCGGAGTGGCATCGAGAAGGAGCAGCGAAGAGCTGATTTTCCAAGGCAAAGTGAC TGTTAATGGTTCAGTATGCAATACTCCTCAGACTCGGGTTGATCCTGCAAAAGATATGATATATGTAAATGGAAGTCGGCTCCCCAAGAGATTGCCTCCA AAGGTGTCTCTGGCCATTAACAAGCCCAAAGGGTACATTTGTTCATGTGGAGAGAAGGAGACCAAGTCTGTGATGGAACTATTTCATGATTATTTCAAGA ATTGGGGGAAAATGAATCATGGAGTGCCTAAACCAAGGCTGTTCACCGTCGGCCGCCTTGATGTTGCCACAACTGGGTTGCTTATTCTGACTAATGATGG TACTTTCTTCAATCGTGTGTGCAACAGTTCTATATATATTGCAACAGTAACTGGTTCTGTTGGCACCCGCCATTTGTTGGCTATCAGTAAAGGAACATTT GTTGATGGTGTACATTGCACACCTGATTCGGTCGAGCTGTTACCATACCAGCCAGATATGTCAAGACCTCGACTTCGGATAGTGGTTCATGAAGGAAGGA ACCACGAAGTCCGGGAGCTTGTAAAGAATGCTGGGCTTCAGGTATATGCATTGAAGCGGATACGTATTGGTGGTTACAGACTTCCAACAGATCTTGGGAT TGGGAAGTATGTTGAACTGAAACAAGGTGATTTGAAATCATTGGGTTGGAAAGGTTGA
AA sequence Show only first row Show all	>Lus10038697 pacid=23143135 polypeptide=Lus10038697 locus=Lus10038697.g ID=Lus10038697.BGIv1.0 annot-version=v1.0 MEECGYVPNVVTYNTMLNWCCKKGRYRIAFDLIDQMASKGIPAYVFTYNMLIDVLCRNNKSPKAYMLLKTMRNRNIPPNEVTYNTLITGFVKEGKVGVAT QIFDEVSVLGLSSNSRSYNSLIEGHCNLANFEIAFRLSKLMEASGLRPSEVSYGTLLKGLCRHNKLHLARSLLERMRIEKMSGCIAYTTMIDGLCQNGLL DEAVQLLNSMAKDGANPDIITFSVLINGFSRVGNVEGAKEVACRMYKLGINPNNVLYATLIYNHCRAGNITQAFRVYAAMNYDGHNASPFICNILVSSLS RSGMLQAAKEFMHHMHRVGIAPNSITFNSLINGFAKSGNAVEAFSVFDEMLHSGHHPCSFTFSSLLMGFCKAGNLTEARKFLDTLHSIPSAVDTITYNTI IVEACRPGNLSDALTLLNEMMQHDLMPDEYTYTIILTGLSRKGKMVATLLFYGKILAKGIMSTNQAIYTCLIDGFFKAGQPKIALYLCEDMEKKGPGIDI IATNAVTDGCSRMGKTAETFPKTPSHPCSSSEFNITFAPSKPKPKPQLNFTDDSTGRQVFVPWIIRGEDGNFQLPTEPHPALLHELANANTGKPKKKEKP KKPPSRRLTETSAAPTPAPTPPHSKAARRYYNENFRESAQRLSKVLAAAGVASRRSSEELIFQGKVTVNGSVCNTPQTRVDPAKDMIYVNGSRLPKRLPP KVSLAINKPKGYICSCGEKETKSVMELFHDYFKNWGKMNHGVPKPRLFTVGRLDVATTGLLILTNDGTFFNRVCNSSIYIATVTGSVGTRHLLAISKGTF VDGVHCTPDSVELLPYQPDMSRPRLRIVVHEGRNHEVRELVKNAGLQVYALKRIRIGGYRLPTDLGIGKYVELKQGDLKSLGWKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10038697 [exp]	0	1
					Lus10004065 [exp]	4.6	0.7498
AT3G11320			Nucleotide-sugar transporter f...		Lus10040710 [exp]	15.1	0.6776
AT4G33590			unknown protein		Lus10036463 [exp]	17.4	0.7367
AT2G31081		CLE4	CLAVATA3/ESR-RELATED 4 (.1)		Lus10015304 [exp]	32.4	0.7005
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10019789 [exp]	42.4	0.6650
AT4G37560			Acetamidase/Formamidase family...		Lus10019294 [exp]	105.8	0.6448
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10023979 [exp]	111.9	0.6569

Compare expression of checked genes

Lus10038697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.