Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54860 624 / 0 ATVPS33 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037969 [exp] 739 / 0 AT3G54860 650 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Lus10007300 [exp] 223 / 3e-68 AT3G54860 179 / 1e-51 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Lus10002776 [exp] 86 / 9e-19 AT3G54860 102 / 3e-25 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Lus10018921 [exp] 43 / 0.0007 AT1G77140 974 / 0.0 vacuolar protein sorting 45 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226600 [exp] 691 / 0 AT3G54860 929 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Potri.008G035600 [exp] 687 / 0 AT3G54860 968 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Potri.005G188000 [exp] 46 / 5e-05 AT1G77140 999 / 0.0 vacuolar protein sorting 45 (.1) Potri.002G071600 [exp] 44 / 0.0002 AT1G77140 996 / 0.0 vacuolar protein sorting 45 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [flax] [poplar] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Lus10038698 pacid=23143071 polypeptide=Lus10038698 locus=Lus10038698.g ID=Lus10038698.BGIv1.0 annot-version=v1.0 ATGATTGATCGACGGATTGCGCTGACAGTGGTAGCCAGCGGTGGTGAGAGTGCATCTTTCTGCGACAATTCCCTCTGCCTTCCCTCTATCAGAGAGCAGT CTCAGAGAGAGCTCGTCAATATTCTCAAGAATATTCGGGGAAAGAAGTGCTTGATTATTGATCCAAAGTTAAGCGGGTCTCTTTCGTTGATCATCCAGAC CTCAATCCTAGTGGAGTATGGGGTTGAACTGCGGCATCTTTCAGCTGACTCGATTCAGACGGATACCACCAAAATTGTCTACCTTGTCCGCTCTCAGTTC GAATTGATGAAATATATCTCTTCAAATGTGCATGATGATATATCTAAAGGACTTCAGAGAGAGTACTATGTTTATTTTGTTCCTCGCAGAGAAGTTGTTT GCGAGAAAGTACTTGAGGAAGAAAAAGTTCATCACTTGATGACCATAGGGGAATATCCATTATACATGGTTCCATTTGACGAGGATGTCATATCATTTGA ACTCGATGGTGCAAACAAAGATTTCCAAGTTGATGGTAACACGAGTTCACTTTGGCATATAGCCAAGGCAATTCATAAGCTTGAGTCCTTTTCTGGGGTG ATACCCAATGTGAGGGCCAAAGGCAGATGTTCTGTACGTGTTGCTGACATCCTTAATCGCATGCAAACTGAGGAACCAGTCAACTTGCAGGATGTTGACA TGGTTACGCCTATGTGTTCTCAGCTAACATATGAAGGACTTATAGATGAGTTTTTTCATATAAATAATGGTTCTGTCGAGCTGGATGCTTCTATTTTGGG TGCTCAACAACAAGAAGGGAAGAAAATAAAGCATCCACTTAATTCAAGTGACAAGTTGTTCAAAGAAACTCGTGATCTCAACTTTGAAGTTGTTGTCCAG GTTCTCCGCCAGAAAGCAACCTCCATGAAGGAGGATTATGCAGAGATGACAACAACCAATCAATCAGTTTCCGAATTGAAAGACTTTGTCAAGAAGCTCA ACTCATTGCCAGAAATGACTAGGCACATAAATCTTGCTCAGCAGTTGACAACGTTCACATCTAAGCAGTCTTTTCTTGCACGACTTAACATGGAACATAC AATTGTTGAGGCTGAGAGTTATGACATATACCTAGCTTCCATTCTCCACATTTACACGTATACCTGCTGTATACATGCTACTTCACGTAACTATATCCCT CACTCCGGCAGGCGAGAACTACTGCACAGTTACGGATTTGAACATATAGCAACCTTGAACAATCTAGAGAAGGCTGGATTGCTTAAAAAGCAGGAATCAA GGAGCAATTGGCTAACTATTAAGCGTGCTTTGCAACTTGTTGTTGAAGATACTGACACTGCCAACCCCAATGACATTGCATATGTCTTCTCTGGGTATGC ACCATTGAGTATTCGACTAGTTCAGCATGCAATTCGATCTGGATGGGTGGATTTCCACATAGTCAATCTTTCGAATCAGTGTCCACAGCTTTGGGAAGGT ACGCGTAGACTGATCCTAGTTTCTGGTATGTTTACGCCCAAGATTGTGATCTGTGGAGAAACATCTGGCTCTCTGACGGATAAGAACCCAGCTTGA
AA sequence Show only first row Show all	>Lus10038698 pacid=23143071 polypeptide=Lus10038698 locus=Lus10038698.g ID=Lus10038698.BGIv1.0 annot-version=v1.0 MIDRRIALTVVASGGESASFCDNSLCLPSIREQSQRELVNILKNIRGKKCLIIDPKLSGSLSLIIQTSILVEYGVELRHLSADSIQTDTTKIVYLVRSQF ELMKYISSNVHDDISKGLQREYYVYFVPRREVVCEKVLEEEKVHHLMTIGEYPLYMVPFDEDVISFELDGANKDFQVDGNTSSLWHIAKAIHKLESFSGV IPNVRAKGRCSVRVADILNRMQTEEPVNLQDVDMVTPMCSQLTYEGLIDEFFHINNGSVELDASILGAQQQEGKKIKHPLNSSDKLFKETRDLNFEVVVQ VLRQKATSMKEDYAEMTTTNQSVSELKDFVKKLNSLPEMTRHINLAQQLTTFTSKQSFLARLNMEHTIVEAESYDIYLASILHIYTYTCCIHATSRNYIP HSGRRELLHSYGFEHIATLNNLEKAGLLKKQESRSNWLTIKRALQLVVEDTDTANPNDIAYVFSGYAPLSIRLVQHAIRSGWVDFHIVNLSNQCPQLWEG TRRLILVSGMFTPKIVICGETSGSLTDKNPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10038698 [exp]	0	1
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10037969 [exp]	1.7	0.7899
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10008412 [exp]	3.0	0.7834
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10015635 [exp]	4.0	0.7788
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010675 [exp]	4.7	0.7884
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10001967 [exp]	5.0	0.7729
AT1G12470			zinc ion binding (.1)		Lus10031618 [exp]	9.9	0.7153
AT5G40740			unknown protein		Lus10014617 [exp]	10.1	0.7574
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	13.5	0.7441
AT1G77680			Ribonuclease II/R family prote...		Lus10009879 [exp]	18.2	0.6662
AT4G01210			glycosyl transferase family 1 ...		Lus10002154 [exp]	19.4	0.7285

Compare expression of checked genes

Lus10038698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.