Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54850 588 / 0 ATPUB14 plant U-box 14 (.1) AT3G46510 454 / 1e-153 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 374 / 4e-119 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 306 / 4e-96 PUB15 Plant U-Box 15 (.1) AT1G23030 297 / 2e-93 PUB11 ARM repeat superfamily protein (.1) AT1G71020 277 / 2e-85 ARM repeat superfamily protein (.1.2) AT5G01830 165 / 1e-43 ARM repeat superfamily protein (.1) AT3G07360 155 / 2e-41 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT2G23140 156 / 2e-40 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT1G29340 155 / 2e-40 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037970 [exp] 981 / 0 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10040834 [exp] 489 / 1e-166 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10016565 [exp] 483 / 1e-164 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10043471 [exp] 311 / 3e-98 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 310 / 2e-92 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10012260 [exp] 295 / 6e-92 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10016016 [exp] 292 / 8e-91 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10007511 [exp] 247 / 1e-73 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 227 / 2e-66 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G035700 [exp] 687 / 0 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 684 / 0 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 505 / 3e-173 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 502 / 3e-172 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G009900 [exp] 347 / 1e-111 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.010G113900 [exp] 332 / 2e-106 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.009G165900 [exp] 318 / 9e-101 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.004G205000 [exp] 309 / 2e-97 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.008G128600 [exp] 292 / 5e-91 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.019G029500 [exp] 187 / 2e-53 AT3G07360 495 / 6e-174 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10038699 pacid=23143154 polypeptide=Lus10038699 locus=Lus10038699.g ID=Lus10038699.BGIv1.0 annot-version=v1.0 ATGGATGATAGCAAAGACGTGGGTTTGGTGAGTGGACTGATGGAGTTGGTGAAGGTGATTTCCGGGTTGTCCGAGTGTAGAAATGTTTGCAAGAAGATGC AAGGCAATTTGGTGAGGAGAATTAAGCTGTTGGGTCCCATGTTTGAGGAATTGAAAGATGGTAATGAGGAGCAGCTTACCAAGGAAGCTGCTAAAGGGTT CCAACTGTTGAGAGCTGCTCTCGATTCAGCTCTGGACCATCTGAGAACCGTCAATGAAGGGAGCAAGGTTTACCAGGCCTTGTATCTAGACAGCATTGCA GTTGAGTTTCACCAGATTACAGAACAAATTGAAGCAGCACTAAGCAACATTTCTTACAACAAGCTTGATTTGTCAGAGGAAGTGCGGGAACAGATTGAGC TAGTGCATGTTCAATTCAAACGAGCAACAGCGAGACCAGATTCTCCTGATGTACAACTGGATCATGATTTAGCTGTTGCACAAAGAGACAAGGATCTCGA CCCTGCTGTACTGAGGAGGCTTTCGGAAAAGCTTCAACTTAAGACGATTGATGATCTTAAGAAGGAGTCCGTTGCATTCCAGGAGCTAGTAATTTCAAGT GAGGGAGATCCTGGAGACTGGTTCGACAAGATTTCTTCCCTTCTTCGAAAGCTGACCATCTTTGTTCAAGTGGAGAACCCAGAAGTTAATGCTCCTGATG CTGAGAAGGGATTTATTAAGCACAGATCTCCTGTTATACCCGATGATTTCCGATGTCCCATTTCTCTTGAACTGATGAAAGATCCTGTTATTGTCTCTAC TGGGCAGACTTATGAAAGATCGTGCATTCAGAAATGGTTAGATGCTGGGCACAAGACATGTCCGAAGACCCAGCAAACACTCCTGCACACTGCACTTACT CCTAACTATGTTTTGAAGAGTTTGATATCCTTGTGGTGTGAAAGCAATGGTGTTGAACTACCGAAGCATCAAGCTGCTTATAGAAACAGAAAACTGGGAA CTGGTGTTTCGGATTGTGATCAAACAACAATTCTTGGAGCTATACCCGACATCGTAGATGTTCTGAAAACCGGAAGCATGGAAGCCAGGGAAAATGCAGC AGCTACCCTTTTCAGTCTATCTGTCATAGATGAGAACAAGGTGGCAATAGGAGCAGCTGGAGCCATCCCAGCATTAATCAACTTGCTCTGCAAGGGTTCT CCGCGAGGAAAGAAAGATGCTGCAACTGCTATATTCAATCTTTCAATATACCAGGGAAATAAAGCAAGAGCTGTAAGAGCTGGTATTGTGCCACCCTTAA TGAGACTGTTAAAGGATGCTGGTTGTGGGATGGTGGACGAAGCATTAGCAATCCTCGCTATTCTCGCAAGCCATCAGGAAGGGAAGGCTGCTATTAGTTT GGCCGATCCAGTTCCTGCGCTGCTGGACGTCATCAGGACTGGTTCTCCTCGCAACCGAGAGAATTCAGCTGCTGTACTGTGGTCATTATGCACCGGGGAT TTGCAGCAGTTGAGGGTAGCCAAGGAGTTGGGTGCAGTAGACGCATTGAATGAACTGTCAGAGAGCGGCACTGACAGAGCGAAACGAAAAGCTGCAAGTA TATTGGAGCTGCTTCAGCGGGTCGTCGACCCAGTTGCCTAA
AA sequence Show only first row Show all	>Lus10038699 pacid=23143154 polypeptide=Lus10038699 locus=Lus10038699.g ID=Lus10038699.BGIv1.0 annot-version=v1.0 MDDSKDVGLVSGLMELVKVISGLSECRNVCKKMQGNLVRRIKLLGPMFEELKDGNEEQLTKEAAKGFQLLRAALDSALDHLRTVNEGSKVYQALYLDSIA VEFHQITEQIEAALSNISYNKLDLSEEVREQIELVHVQFKRATARPDSPDVQLDHDLAVAQRDKDLDPAVLRRLSEKLQLKTIDDLKKESVAFQELVISS EGDPGDWFDKISSLLRKLTIFVQVENPEVNAPDAEKGFIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALT PNYVLKSLISLWCESNGVELPKHQAAYRNRKLGTGVSDCDQTTILGAIPDIVDVLKTGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALINLLCKGS PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRLLKDAGCGMVDEALAILAILASHQEGKAAISLADPVPALLDVIRTGSPRNRENSAAVLWSLCTGD LQQLRVAKELGAVDALNELSESGTDRAKRKAASILELLQRVVDPVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10038699 [exp]	0	1
AT5G61530			small G protein family protein...		Lus10032491 [exp]	4.5	0.8383
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	5.5	0.8347
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10023477 [exp]	6.5	0.8161
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	9.6	0.8178
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032476 [exp]	10.2	0.8175
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10034177 [exp]	12.5	0.7908
AT5G46150			LEM3 (ligand-effect modulator ...		Lus10023290 [exp]	12.6	0.8092
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Lus10002098 [exp]	14.5	0.8146
AT2G41830			Uncharacterized protein (.1)		Lus10026298 [exp]	14.8	0.8085
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10040261 [exp]	15.5	0.7753

Compare expression of checked genes

Lus10038699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.