Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12000 844 / 0 Phosphofructokinase family protein (.1) AT4G04040 819 / 0 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT1G20950 332 / 5e-107 Phosphofructokinase family protein (.1) AT1G76550 330 / 5e-106 Phosphofructokinase family protein (.1) AT5G56630 64 / 2e-10 PFK7 phosphofructokinase 7 (.1) AT4G08876 55 / 1e-09 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related (.1) AT4G26270 60 / 2e-09 PFK3 phosphofructokinase 3 (.1) AT5G47810 54 / 1e-07 PFK2 phosphofructokinase 2 (.1) AT4G32840 54 / 2e-07 PFK6 phosphofructokinase 6 (.1) AT4G29220 53 / 4e-07 PFK1 phosphofructokinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037972 [exp] 932 / 0 AT4G04040 498 / 9e-173 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) Lus10016047 [exp] 322 / 7e-103 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1) Lus10025167 [exp] 321 / 1e-102 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1) Lus10005488 [exp] 64 / 2e-10 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10043044 [exp] 62 / 9e-10 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10006032 [exp] 61 / 1e-09 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10011143 [exp] 61 / 1e-09 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 59 / 6e-09 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 56 / 5e-08 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G015900 [exp] 901 / 0 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.006G281900 [exp] 901 / 0 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.004G003800 [exp] 857 / 0 AT1G12000 946 / 0.0 Phosphofructokinase family protein (.1) Potri.011G015600 [exp] 535 / 0 AT1G12000 637 / 0.0 Phosphofructokinase family protein (.1) Potri.005G257800 [exp] 326 / 2e-104 AT1G76550 1065 / 0.0 Phosphofructokinase family protein (.1) Potri.002G003100 [exp] 312 / 3e-99 AT1G76550 1034 / 0.0 Phosphofructokinase family protein (.1) Potri.016G002700 [exp] 63 / 2e-10 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.006G152600 [exp] 60 / 2e-09 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.018G069200 [exp] 59 / 4e-09 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 56 / 4e-08 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00365 [flax] [poplar] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Lus10038700 pacid=23143027 polypeptide=Lus10038700 locus=Lus10038700.g ID=Lus10038700.BGIv1.0 annot-version=v1.0 ATGGCTCCGTCCTTTGTAATTAACGGCGACTTCTCCGCCACCACCAACTCCTCCAACTCCACTGGTCGCGTTTCCTCCGTTTACAGCGACGTCCAGACCA GCCGAATCGACTATCGACTCCCACTCCCCTCCGTCCTCACTGCTCCATTCAAGATCGTCGATGGTCCCCCTAGCTCCGCCGCCGGAAACCCTGATGAGAT CTCAAAGCTGTTCCCAAATCTGTTCGGCCAACCTTCTTCAATGCTGCTGCCAAATGACGTCCATACTCTCCCTTCCGATCGTAAACTCAAAATCGGCGTC GTTTTGTCTGGAGGCCAGGCACCAGGAGGACACAATGTCATCTCCGGGATCTTTGATTACTTGCAGGCTCATGCTAAGGGAAGTACACTATATGGCTTTC GTGGAGGTCCTGCGGGCATTATGAAGTGCAAATATGTGGAACTGAATCCTGACTACATTCGCCCTTACAGGAATCAGGGTGGTTTTGATATGATCTGCAG TGGCAGGGACAAAATTGAGACACCTGAGCAGTTTAAGCAAGCTGAAGAAACTGCATTGAAGCTTGATTTGGATGGGATTGTTGTTATTGGCGGGGATGAC TCGAACACAAATGCTTGCCTGCTTGCTGAAAACTTCAGGAGCAAGAATATGAAGGCGAGGGTAATTGGATGCCCGAAAACCATTGATGGTGATCTGAAAT GCAAAGAGGTCCCTGTTAGTTTTGGATTCGATACTGCTTGCAAGATTTATGCTGAAATGATTGGGAATGTGATGATTGATGCTCGATCTACAGGGAAATA TTATCATTTTGTACGGCTTATGGGTCGAGCTGCTTCCCACATTACCTTGGAATGTGCTTTGCAAACTCACCCTAACATAACCATCATCGGAGAAGAGGTT CAGCAGCTCATCGCAGAGCTCAACGAAATCTTGGCACATGAAGTTGTGGATGAAGCTGGTCTATGGAAGAATAAACTTGCCGAGCAGTCTCTTCAGCTTT TTGATTTCTTACCTCAGGCAATTCAGGAGCAATTGATGCTTGAAAGAGATCCACATGGAAATGTTCAGGTTGCCAAGATAGAGACAGAAAAAATGCTCAT TCAGATGGTTGAAACCGAGTTACAGAAGAGGACCCTAGAAGGTTCATACAAAGGCCAATTCAAAGGACAGTCCCACTTCTTTGGATATGAAGGAAGATGT GGCTTGCCAACAAATTTTGATTCTATGTACTGTTACGCGCTGGGCTATGCTGCAGCAATTCTTCTTCACAGTGGGAAGACTGGATTGATATCATCAATTG GAAACCTCGGTGCCCCCGTTTCAGAATGGACAGTGGGCGGGACTGCCTTGACGTCGTTGATGGATGTGGAGAGGAGACATGGTAAATTCAAGGCCGTCAT TAAGAAGGCAATGGTAGAACTTGAAGGGGCACCTTTCAAAAAGTTTGCTTCACTACGGGATGAGTGGGCACTCAAGAACAGATACACAAGTCCTGGACCA ATTCAGTTCATGGGGCCTGGGGCTGAAGCTGTGAATCACACCCTACTCTTGGAACTTGGACTCATGGTGTAA
AA sequence Show only first row Show all	>Lus10038700 pacid=23143027 polypeptide=Lus10038700 locus=Lus10038700.g ID=Lus10038700.BGIv1.0 annot-version=v1.0 MAPSFVINGDFSATTNSSNSTGRVSSVYSDVQTSRIDYRLPLPSVLTAPFKIVDGPPSSAAGNPDEISKLFPNLFGQPSSMLLPNDVHTLPSDRKLKIGV VLSGGQAPGGHNVISGIFDYLQAHAKGSTLYGFRGGPAGIMKCKYVELNPDYIRPYRNQGGFDMICSGRDKIETPEQFKQAEETALKLDLDGIVVIGGDD SNTNACLLAENFRSKNMKARVIGCPKTIDGDLKCKEVPVSFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEV QQLIAELNEILAHEVVDEAGLWKNKLAEQSLQLFDFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELQKRTLEGSYKGQFKGQSHFFGYEGRC GLPTNFDSMYCYALGYAAAILLHSGKTGLISSIGNLGAPVSEWTVGGTALTSLMDVERRHGKFKAVIKKAMVELEGAPFKKFASLRDEWALKNRYTSPGP IQFMGPGAEAVNHTLLLELGLMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12000			Phosphofructokinase family pro...		Lus10038700 [exp]	0	1
AT4G04040		MEE51	maternal effect embryo arrest ...		Lus10037972 [exp]	1.0	0.9655
AT3G63210		MARD1	MEDIATOR OF ABA-REGULATED DORM...		Lus10022073 [exp]	1.7	0.9159
AT1G30630			Coatomer epsilon subunit (.1)		Lus10038422 [exp]	2.0	0.9380
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10013032 [exp]	2.8	0.9097
AT1G02570			unknown protein		Lus10025023 [exp]	5.1	0.8856
AT1G76240			Arabidopsis protein of unknown...		Lus10012275 [exp]	6.8	0.8613
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10016910 [exp]	6.9	0.8917
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10019509 [exp]	8.5	0.8867
AT5G11710			ENTH/VHS family protein (.1)		Lus10005498 [exp]	8.5	0.8897
AT3G06035			Glycoprotein membrane precurso...		Lus10010516 [exp]	8.8	0.8959

Compare expression of checked genes

Lus10038700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.