Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) AT3G09320 272 / 2e-91 DHHC-type zinc finger family protein (.1) AT4G22750 124 / 2e-33 DHHC-type zinc finger family protein (.1.2) AT4G22753 124 / 6e-32 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT3G60800 116 / 1e-30 DHHC-type zinc finger family protein (.1) AT4G00840 110 / 1e-28 DHHC-type zinc finger family protein (.1) AT3G56930 90 / 3e-20 DHHC-type zinc finger family protein (.1.2) AT4G24630 88 / 8e-20 DHHC-type zinc finger family protein (.1) AT5G50020 88 / 1e-19 DHHC-type zinc finger family protein (.1.2) AT3G26935 86 / 1e-18 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037973 [exp] 402 / 7e-143 AT5G04270 207 / 1e-66 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 283 / 1e-95 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 281 / 8e-95 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10032199 [exp] 120 / 8e-32 AT3G60800 409 / 2e-144 DHHC-type zinc finger family protein (.1) Lus10024561 [exp] 119 / 1e-31 AT3G60800 411 / 2e-145 DHHC-type zinc finger family protein (.1) Lus10015872 [exp] 98 / 6e-24 AT4G22750 241 / 4e-88 DHHC-type zinc finger family protein (.1.2) Lus10012455 [exp] 94 / 3e-21 AT2G14255 597 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10002694 [exp] 91 / 1e-20 AT4G00840 353 / 4e-122 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 91 / 2e-20 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226100 [exp] 417 / 6e-149 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) Potri.006G087400 [exp] 285 / 1e-96 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 276 / 6e-93 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.014G069200 [exp] 123 / 4e-33 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.002G147300 [exp] 114 / 6e-30 AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) Potri.001G117100 [exp] 114 / 7e-30 AT3G60800 365 / 6e-127 DHHC-type zinc finger family protein (.1) Potri.003G115600 [exp] 110 / 4e-28 AT3G60800 346 / 2e-119 DHHC-type zinc finger family protein (.1) Potri.014G104000 [exp] 96 / 7e-23 AT4G00840 297 / 5e-101 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 91 / 1e-20 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.014G153600 [exp] 88 / 1e-19 AT5G41060 230 / 2e-71 DHHC-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10038701 pacid=23143048 polypeptide=Lus10038701 locus=Lus10038701.g ID=Lus10038701.BGIv1.0 annot-version=v1.0 ATGAAGTGGAAGAGATTTGCGACAATCCCAGTATGCAGTGTGTTGATGCTAATGGGTTTAATTTACTACATCACCGTCTTCATCTTCATTGACGATTGGG TCGGGTTGCCGAGCTCATCTGGAACTCTTAACGCCTTGATCTTCACTTCCATGGCCTCTCTCTGCCTTTTCTCTTTTGCTGCTTCTGTTCTAACTGACCC TGGTTACGTCCCGCCTTCTTATGTCCCTGATGTCGAAGGAGCTTCTTCTCTTATGGATCCGGACAGCCAAAAGGATAGTTCAAGACAGAGGCAATGTGAT AAGTGTTCTAAATATAAACCTCCCAGAGCTCATCATTGCCGCGTCTGCAGGGTTTGTGTTTTGAGAATGGATCATCATTGTTTGTGGATAAATAATTGTG TTGGTTACTGGAACTATAAGGCCTTTTTCGTTTTGGTGTTCTATGCAACTGCAGCTTGCATCTATTCTCTGGTTGTGATACTGAATTGTTCTACGCATAA GGAGTGGGATATCGAAGGGCGGCTCCACTTCAAGATTTTCTATATTCTTTCCGGGATATTGATGGCTGGCATGAGCATAACACTTGGGACTCTGCTGGGT TGGCATATTTACCTAATTGCTCGTAATATGACTACCATAGAGTATCATGAAGGAACTAGAGCAGCTTGGTTGGCCAAGAAATCTGGCCAGATTTATCGAC ACCCATTCAATATCAGTGTCTATGGAAACATTTCCTCGGTTTTGGGTCGAAACATGCTGAAGTGGTTTTGTCCCACGGCAGTTGGCCACCTGAAAGATGG AACGCATTTCCCTACTTCACATCAGAGTTAG
AA sequence Show only first row Show all	>Lus10038701 pacid=23143048 polypeptide=Lus10038701 locus=Lus10038701.g ID=Lus10038701.BGIv1.0 annot-version=v1.0 MKWKRFATIPVCSVLMLMGLIYYITVFIFIDDWVGLPSSSGTLNALIFTSMASLCLFSFAASVLTDPGYVPPSYVPDVEGASSLMDPDSQKDSSRQRQCD KCSKYKPPRAHHCRVCRVCVLRMDHHCLWINNCVGYWNYKAFFVLVFYATAACIYSLVVILNCSTHKEWDIEGRLHFKIFYILSGILMAGMSITLGTLLG WHIYLIARNMTTIEYHEGTRAAWLAKKSGQIYRHPFNISVYGNISSVLGRNMLKWFCPTAVGHLKDGTHFPTSHQS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04270			DHHC-type zinc finger family p...		Lus10038701 [exp]	0	1
AT5G07720			Galactosyl transferase GMA12/M...		Lus10000563 [exp]	3.9	0.8373
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	6.8	0.8197
AT1G52420			UDP-Glycosyltransferase superf...		Lus10011469 [exp]	7.9	0.7969
AT3G57400			unknown protein		Lus10042066 [exp]	9.5	0.8050
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Lus10003045 [exp]	13.0	0.8153
AT3G10290			Nucleotide-sugar transporter f...		Lus10042039 [exp]	13.2	0.8166
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	13.6	0.8049
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10038022 [exp]	19.1	0.7325
AT2G22900			Galactosyl transferase GMA12/M...		Lus10019265 [exp]	19.8	0.7897
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	20.2	0.8076

Compare expression of checked genes

Lus10038701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.