Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04260 189 / 9e-61 WCRKC2 WCRKC thioredoxin 2 (.1) AT5G06690 133 / 1e-38 WCRKC1 WCRKC thioredoxin 1 (.1.2) AT1G03680 50 / 2e-07 ATHM1, ATM1, TRX-M1 ARABIDOPSIS THIOREDOXIN M-TYPE 1, thioredoxin M-type 1 (.1) AT3G15360 47 / 2e-06 ATHM4, ATM4, TRX-M4 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037975 [exp] 181 / 1e-58 AT5G04260 149 / 3e-47 WCRKC thioredoxin 2 (.1) Lus10021067 [exp] 136 / 6e-40 AT5G06690 215 / 3e-71 WCRKC thioredoxin 1 (.1.2) Lus10017244 [exp] 99 / 1e-25 AT5G06690 156 / 2e-48 WCRKC thioredoxin 1 (.1.2) Lus10036698 [exp] 42 / 5e-05 AT1G69880 113 / 5e-33 thioredoxin H-type 8 (.1) Lus10013827 [exp] 42 / 8e-05 AT3G53220 172 / 2e-56 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G225701 [exp] 201 / 4e-65 AT5G04260 204 / 3e-67 WCRKC thioredoxin 2 (.1) Potri.008G036400 [exp] 194 / 9e-63 AT5G04260 216 / 8e-72 WCRKC thioredoxin 2 (.1) Potri.016G059500 [exp] 139 / 3e-41 AT5G06690 212 / 4e-70 WCRKC thioredoxin 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10038703 pacid=23143077 polypeptide=Lus10038703 locus=Lus10038703.g ID=Lus10038703.BGIv1.0 annot-version=v1.0 ATGTCTGAATCCGTACAACTCTCCCGAGTTCGTCCCATCGGAGTTTTGCGGCCCTCTTCCACAACACCTCCCACTTCCTCTGTATTTCCTTCCTCGTCAT TTCCTTCTCATGGTTATCGAAATCGCTCCTTTTCGAGCTGCAGAGCTGTCTTCTCCTGCTCTGGATCACTCCCCGCTTCTAAACATTTGAAATTGGAATC TCATCAAGCGTCTGGTTCTAAGTTTCCTATCTCTTATGTCGTCAACAACGGAAAAGGTTCCGTCCAGGAATTGGACGACGAGCCTGTATCGATTGACTTG ATCCCCGTTTGCAGTGACACCCAATTTGATCTGGTTATAGCTGAGGCCGATCAGCTCCATGAAGCAGCTATTATTGTTTGGATGGCAAATTGGTGCCGAA AATGTATATATTTGAAACCAAAGCTGGAAAGATTAGCAGCTGATTATCATCCCAGTCTGAGATTCTACTGCGTAGACGTCAACAACGTTCCTCACAAGCT AGTAGCTCGAGCAGGAGTCACTAAAATGCCAACAATACAGGTAACAAAATCTCATCCCCCTTCTACTCTGGCATCACTCCTTGATCACCTGTGGAGAGAT GGGGAGAAGCAAGGGGAAGTGATTGGCGGGCACAAGGCTTACCAGGTGATCAATGAAGTTCGACAAATGATCGAGACCAGTAGTATTGAGGGTGACCTCT GA
AA sequence Show only first row Show all	>Lus10038703 pacid=23143077 polypeptide=Lus10038703 locus=Lus10038703.g ID=Lus10038703.BGIv1.0 annot-version=v1.0 MSESVQLSRVRPIGVLRPSSTTPPTSSVFPSSSFPSHGYRNRSFSSCRAVFSCSGSLPASKHLKLESHQASGSKFPISYVVNNGKGSVQELDDEPVSIDL IPVCSDTQFDLVIAEADQLHEAAIIVWMANWCRKCIYLKPKLERLAADYHPSLRFYCVDVNNVPHKLVARAGVTKMPTIQVTKSHPPSTLASLLDHLWRD GEKQGEVIGGHKAYQVINEVRQMIETSSIEGDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Lus10038703 [exp]	0	1
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10002264 [exp]	1.4	0.9040
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10017166 [exp]	3.7	0.8729
					Lus10007667 [exp]	4.0	0.8859
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10026346 [exp]	4.2	0.8729
					Lus10040920 [exp]	4.2	0.8887
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10019327 [exp]	6.9	0.8527
AT1G03290			unknown protein		Lus10012381 [exp]	8.7	0.8496
AT1G14300			ARM repeat superfamily protein...		Lus10036742 [exp]	9.2	0.8565
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	9.7	0.8763
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008540 [exp]	12.0	0.8866

Compare expression of checked genes

Lus10038703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.