Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10360 912 / 0 APUM4 pumilio 4 (.1) AT2G29200 754 / 0 APUM1 pumilio 1 (.1) AT2G29190 748 / 0 APUM2 pumilio 2 (.1.2) AT2G29140 736 / 0 APUM3 pumilio 3 (.1) AT3G20250 456 / 8e-145 APUM5 pumilio 5 (.1) AT4G25880 416 / 1e-130 APUM6 pumilio 6 (.1.2.3) AT1G22240 182 / 7e-49 APUM8 pumilio 8 (.1) AT1G78160 181 / 1e-47 APUM7 pumilio 7 (.1) AT5G56510 172 / 4e-45 APUM12 pumilio 12 (.1) AT4G08840 160 / 3e-41 APUM11 pumilio 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037976 [exp] 1853 / 0 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10002708 [exp] 794 / 0 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10040782 [exp] 739 / 0 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10016513 [exp] 737 / 0 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10001567 [exp] 726 / 0 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 709 / 0 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10000516 [exp] 587 / 0 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10034808 [exp] 460 / 1e-145 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10033353 [exp] 457 / 1e-145 AT3G20250 732 / 0.0 pumilio 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G036500 [exp] 1158 / 0 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 1081 / 0 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G058300 [exp] 795 / 0 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.010G201100 [exp] 664 / 0 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.009G034900 [exp] 652 / 0 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.001G243400 [exp] 649 / 0 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.008G004300 [exp] 486 / 1e-155 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.006G165100 [exp] 460 / 5e-146 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.003G009900 [exp] 453 / 2e-143 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.003G222300 [exp] 210 / 1e-56 AT5G56510 497 / 4e-168 pumilio 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00806 [flax] [poplar] PUF Pumilio-family RNA binding repeat CL0020 [flax] [poplar] PF07990 [flax] [poplar] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Lus10038706 pacid=23143136 polypeptide=Lus10038706 locus=Lus10038706.g ID=Lus10038706.BGIv1.0 annot-version=v1.0 ATGGCCTCTGTGAGCAACATAGACATGCTGCCGACCTTAGATGATCGTCTGCAAGAAGGCAACGGGAGTTTGGAGCAAAGGTTACAGAGTGAGCTAGACC ATATGCTTCGAGCCCAGCGTAACCAACGCATGGTTGATCGAGATATGGATCAAAACATATACAGGAGTGGCAGTGCGCCACCAACCGTTGAGGGGTCGTT GCGTGCAGTGGGGAGTCTTTTCCAGAATTCCAGTTTTAATGGCGTTGCTACTAATGGTTTTGGTAACGGTAACGGTAACACTACTAATAATAATACTATG ATGACTGAAGATGAAATCAGGTTGCACCCTGCCTATCTTTCCTACTACTATTCGAATGACAACATAAATCCTAGACTGCCTCCTCCCTTGTTGTCCAAAG AGGATTGGCGTGTTGCACAACGCTTCCAGGCTGGTGGATCTTCCTTTGGAGGCATTGGAGACTTGAGGAAGAAGAAGCATGTTGATAAAGGTGATAGTTC CTCTCTGTTCTCTATGCAGCCTGGAATTTCACCACATGATGCCGAAAAGGAACTAATGGAGTTAAGAAATGGTAGTAGAAGCAATTTCTCTAGGCAAACT ATGGGTGTATGGCCAGATAGCAACGCAGATGGTCTCATAGGATTGCAAGGCTCTGGGATTGGGGCAAGGAGGAAGAGCTTTGCTGACATTCTTCAGGAGG GACTTGATCAGTCAGTTTCCATGGGAGGCCAGTTGTCACGACCTGCTAGTCATAATGCATTGTCTAAGTCAGTTACAGTTGGGTTGCCAAATGGAATGGA ATCAATCGAGAGTTTGAAAGCAGGAGCACCTCCTCCTGGATTCAGTGGCGCTAGTGTTTCTCATTCCTTTGCATCTGCTGTTGGTTCATCATTATCAAGA AGCACAACCCCTGAACATAAACTGGTTGGGAGACCCCCTACTCCTTGTCTTCCTCCTACTGCAAACAGAGTTGATAAGCATATTGCTGCTGCGGCTTCAA CTCAACCGAATGGCCATTCATCCGGGTTGAGTGACTTGGGTGAAATCAATGCTGCATTATCTGGTTTAGCCCTCTCAACTTCTAGACATACCGATCAAGA TAGTGATAATTTGCATACGCGTCACCTGGATAGGCAAGCTGGAGATATGCTTCTTAAGATGTCAAATGGCCAAACCCGGAATTTTACTCATTCCGACACG TTCCCACTTTCTTCTGATTATACTAATCTTGCTAGTAAAATAGGAGTCATGTCGAGCTTTGATGGTCCAAATGTAAACTCTAATGGAGAAGTTCGCATTC CTAAAAGAACTTCGTCCTCTTCAAATCTTCATTCAACGGTACATTCATCAGGCGTTGGGGGTTTTGAAGGTGCAGATATTCGTCATCACAGCATGAATAT TCCAAGCTCAGCCTTAGATGGTAGTACAATTGCACAAAATCTGAATCGACTGGGAAGTCAAGTTGGGTCAGATCTTCATTCTCCCATTATGGATGCACAT TATGCACAGTATTTGCGCAGACCGTCAGACTATTCAACCCATACGTCAGCTAGTTCAAGTGGTCATCAATTCCAAAATTATGTAGGCACTTCACAGGGAG ACCTTACAGATATTCAAAAAGCATATCTTGAGCTGATGCTTTCCCAACAGAAGCAAGAATACGATCTGCCGCTTTCTCGTAAGGCTGCCACTTTGAATCA AGCATACTATAGGAATCCATCATACGGTCTTGGTATACCATATCATGTAAACTCAATGGGAAACTCTGTCCATCCTTCTATTACATCTAGAAATCTTCAG AATGAGCGGGTTGCACACTTTGCTTCCATGATGCGAAACTCAATGGGAGGTTCTGTTGGCTCGTGGAACTCTGACACTGGTGGTGGGACGGCTGAAAGGA GATACAACTCATCTTTACTTGATGAGTTTAAGAACAACAAGACCAGGTCCTTTGAACTCTTAGATATAGTGGGGCAAGTTGTTGAATTCAGTACGGATCA GTATGGCAGTCGGTTCATTCAGCAGAAATTAGAAACTGCTACTGTTGATGAGAAGAACAAGATATTTCCAGAGATCATCCCTCATGCTCGTACCTTGATG ACTGATGTCTTTGGAAATTACGTTGTACAGAAATTCTTTGAGCATGGAACTGAAGCCCAAAGAATGGAGTTGGCTAGTGAACTTACTGGTCATGTCTTAC CTCTCAGCCTCCAGATGTATGGGTGCAGAGTAATCCAGAAGGCCTTGGAAGTGGTTGATGCCAATCACCAGATTGAAATGGTGACAGAGCTTGATGGTTC GGTGATGAAATGTGTTCGTGATCAGAATGGTAATCACGTTATCCAGAAGTGCATAGAGTGTGTCCCTGAAGACAAAATTGAGTTTATCATCTCATCATTT TATGGACAAGTTGTGGTACTTTCAACCCATCCTTATGGCTGTCGGGTGATTCAGGTTAAGATGATTGTGCTTTATGCTTATTCAGATTTCAAACGAGTTC TCGAGCACTGCAAGGATGAGAAGACACAGCAAGTTATTATGGACGAGATCATGCAATCAGTTTGCACCTTAGCACAAGATCAATATGGAAATTATGTTAT TCAGCACGTCCTTGAACATGGTAAACCGCACGAAAGATCAGCTATTATCAGCAAGCTTGCAGGGCAAATCGTCAAAATGAGTCAACAGAAATTCGCTTCG AACGTGGTGGAGAAGTGCTTAACATTTGGTGGTCCCGAGGAACGCCAGATTTTGGTGAACGAGATGCTTGGTTCAACTGACGAAAATGAGCCTTTGCAGG CCATGATGAAAGACCCGTTTGGAAACTACGTTGTGCAGAAGGTTTTGGAGACATGCGACGATCAAAGCCTCGAGCTAATCCTGTCTCGAATAAAAGTCCA TTTGAACGCCTTGAAGAGGTACACATACGGAAAGCACATTGTTTCTCGAGTCGAGAAGCTCATCACAACCGGAGAGAGGCGCATTGGATTGTCATCTTCA GTGTCCACATAA
AA sequence Show only first row Show all	>Lus10038706 pacid=23143136 polypeptide=Lus10038706 locus=Lus10038706.g ID=Lus10038706.BGIv1.0 annot-version=v1.0 MASVSNIDMLPTLDDRLQEGNGSLEQRLQSELDHMLRAQRNQRMVDRDMDQNIYRSGSAPPTVEGSLRAVGSLFQNSSFNGVATNGFGNGNGNTTNNNTM MTEDEIRLHPAYLSYYYSNDNINPRLPPPLLSKEDWRVAQRFQAGGSSFGGIGDLRKKKHVDKGDSSSLFSMQPGISPHDAEKELMELRNGSRSNFSRQT MGVWPDSNADGLIGLQGSGIGARRKSFADILQEGLDQSVSMGGQLSRPASHNALSKSVTVGLPNGMESIESLKAGAPPPGFSGASVSHSFASAVGSSLSR STTPEHKLVGRPPTPCLPPTANRVDKHIAAAASTQPNGHSSGLSDLGEINAALSGLALSTSRHTDQDSDNLHTRHLDRQAGDMLLKMSNGQTRNFTHSDT FPLSSDYTNLASKIGVMSSFDGPNVNSNGEVRIPKRTSSSSNLHSTVHSSGVGGFEGADIRHHSMNIPSSALDGSTIAQNLNRLGSQVGSDLHSPIMDAH YAQYLRRPSDYSTHTSASSSGHQFQNYVGTSQGDLTDIQKAYLELMLSQQKQEYDLPLSRKAATLNQAYYRNPSYGLGIPYHVNSMGNSVHPSITSRNLQ NERVAHFASMMRNSMGGSVGSWNSDTGGGTAERRYNSSLLDEFKNNKTRSFELLDIVGQVVEFSTDQYGSRFIQQKLETATVDEKNKIFPEIIPHARTLM TDVFGNYVVQKFFEHGTEAQRMELASELTGHVLPLSLQMYGCRVIQKALEVVDANHQIEMVTELDGSVMKCVRDQNGNHVIQKCIECVPEDKIEFIISSF YGQVVVLSTHPYGCRVIQVKMIVLYAYSDFKRVLEHCKDEKTQQVIMDEIMQSVCTLAQDQYGNYVIQHVLEHGKPHERSAIISKLAGQIVKMSQQKFAS NVVEKCLTFGGPEERQILVNEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGERRIGLSSS VST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10360		APUM4	pumilio 4 (.1)		Lus10038706 [exp]	0	1
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	4.9	0.8013
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	6.7	0.8051
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10027139 [exp]	9.0	0.7901
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10033386 [exp]	9.2	0.7575
AT2G39920			HAD superfamily, subfamily III...		Lus10040231 [exp]	9.5	0.7507
AT4G36980			unknown protein		Lus10019346 [exp]	16.3	0.7521
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10034840 [exp]	18.4	0.7116
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Lus10028438 [exp]	20.7	0.7200
AT1G03080			kinase interacting (KIP1-like)...		Lus10006896 [exp]	21.2	0.7369
AT3G29180			Protein of unknown function (D...		Lus10037132 [exp]	25.1	0.7044

Compare expression of checked genes

Lus10038706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.