Plant FIBer expression Database

Lus10038707 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005336
[exp]
67 / 2e-13 AT2G13450 43 / 7e-05 unknown protein
Lus10010661
[exp]
54 / 9e-09 ND /
Lus10014248
[exp]
45 / 2e-05 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10038707 pacid=23143124 polypeptide=Lus10038707 locus=Lus10038707.g ID=Lus10038707.BGIv1.0 annot-version=v1.0
ATGCCGGTTTCAACGGGTGGAGATGGTTTTCTCCCTCTCATCTTACTGGTTATGGGTTTGCCTTATATCAACTCTATGGGTTCTAACTCTAATTATGCCC
TCGTCGTAATCATTTTGGAGCATCATGCCTATTGTGCCGATGATCTACAAGATGTTAGGGGTCGAAGCAACCTCAGCCTTCTGGGTCGTATTTTCTGGGA
TGAACCGAAGGAGTTGCGTTTGGTCGAACAGGCTCTTAATTTTGTTTGGAAGATAAATTCTATCAGAGTTTTCGATGCCGGTCATGGTTTTTACCAGTTT
ATTATCCCCACGAGAACTAAACGGTCATTTGCATTACGATTCCAGCCTCGGTGGTTCCGCAAACACATCATCCATTTCTCTACGAAGGAGACTGCCTCAG
ATGAGCTCTTTGAATCACTCCACATGATGAATATATGGGTCAAGCTCACTAGCATTCCATTGGCCTTCCGTATAATTGCTTTGGGAAGGCGACTCCTGGA
ACCTCTTGGTGAATTATTAAAAACTGGTTATTTTGATGCTCATTTACCGGAAGGTTTTTATGTGAAAGGTCTTCTTCGATTCGACCTTTATGATTCTTTC
CCAGGTTATTTCGGTGCCCACTCTCTTAATAATCTCCTCTTCGATTATGTTGTTTCTCACTCATACTCTTCCCCAGGTTTGGTTGAGGCAGAAGATGATG
ATGAACAATTATTTTCGATGTTTTTCCAGTACTTTAATGTGCCATGTGTATGCTACCGGTATGGTTTCCTTGGTCATGCCGTTCGAGACTGCCCATATCC
AGAGTTGGAGCTCGATCCTGAAAGTTCAGGTTCTTAG
AA sequence
>Lus10038707 pacid=23143124 polypeptide=Lus10038707 locus=Lus10038707.g ID=Lus10038707.BGIv1.0 annot-version=v1.0
MPVSTGGDGFLPLILLVMGLPYINSMGSNSNYALVVIILEHHAYCADDLQDVRGRSNLSLLGRIFWDEPKELRLVEQALNFVWKINSIRVFDAGHGFYQF
IIPTRTKRSFALRFQPRWFRKHIIHFSTKETASDELFESLHMMNIWVKLTSIPLAFRIIALGRRLLEPLGELLKTGYFDAHLPEGFYVKGLLRFDLYDSF
PGYFGAHSLNNLLFDYVVSHSYSSPGLVEAEDDDEQLFSMFFQYFNVPCVCYRYGFLGHAVRDCPYPELELDPESSGS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10038707
[exp]
0 1
AT1G64660 ATMGL methionine gamma-lyase (.1) Lus10001671
[exp]
3.5 1.0000
AT1G18720 Protein of unknown function (D... Lus10001647
[exp]
5.6 1.0000
Lus10002009
[exp]
7.3 1.0000
Lus10002449
[exp]
7.7 1.0000
AT5G02230 Haloacid dehalogenase-like hyd... Lus10028107
[exp]
8.5 1.0000
AT5G13840 FZR3 FIZZY-related 3 (.1.2) Lus10002972
[exp]
8.7 1.0000
AT1G34355 FHA ATPS1 PARALLEL SPINDLE 1, forkhead-a... Lus10028665
[exp]
9.2 1.0000
AT5G12460 Protein of unknown function (D... Lus10003179
[exp]
9.8 1.0000
AT1G45191 BGLU1 beta glucosidase 1, Glycosyl h... Lus10030372
[exp]
10.5 1.0000
Lus10003763
[exp]
10.6 1.0000

Lus10038707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.