Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04250 353 / 3e-121 Cysteine proteinases superfamily protein (.1.2) AT5G03330 250 / 1e-80 Cysteine proteinases superfamily protein (.1.2) AT3G02070 231 / 4e-75 Cysteine proteinases superfamily protein (.1) AT3G22260 209 / 6e-66 Cysteine proteinases superfamily protein (.1.2.3) AT2G39320 96 / 2e-23 Cysteine proteinases superfamily protein (.1) AT5G67170 65 / 1e-11 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT2G27350 54 / 1e-07 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037977 [exp] 709 / 0 AT5G04250 361 / 5e-124 Cysteine proteinases superfamily protein (.1.2) Lus10037388 [exp] 271 / 4e-89 AT5G04250 239 / 6e-77 Cysteine proteinases superfamily protein (.1.2) Lus10001404 [exp] 270 / 3e-88 AT5G03330 327 / 9e-111 Cysteine proteinases superfamily protein (.1.2) Lus10023019 [exp] 264 / 5e-86 AT5G03330 325 / 4e-110 Cysteine proteinases superfamily protein (.1.2) Lus10026525 [exp] 256 / 6e-83 AT5G03330 292 / 4e-97 Cysteine proteinases superfamily protein (.1.2) Lus10013813 [exp] 254 / 4e-82 AT5G03330 280 / 2e-92 Cysteine proteinases superfamily protein (.1.2) Lus10010459 [exp] 217 / 3e-69 AT3G22260 338 / 7e-119 Cysteine proteinases superfamily protein (.1.2.3) Lus10027312 [exp] 212 / 2e-66 AT3G22260 303 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Lus10003816 [exp] 187 / 9e-58 AT3G22260 298 / 2e-103 Cysteine proteinases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G036700 [exp] 414 / 1e-144 AT5G04250 372 / 2e-128 Cysteine proteinases superfamily protein (.1.2) Potri.010G225400 [exp] 412 / 1e-143 AT5G04250 360 / 2e-123 Cysteine proteinases superfamily protein (.1.2) Potri.006G125900 [exp] 293 / 2e-97 AT5G03330 329 / 1e-111 Cysteine proteinases superfamily protein (.1.2) Potri.016G094700 [exp] 290 / 2e-96 AT5G03330 316 / 9e-107 Cysteine proteinases superfamily protein (.1.2) Potri.016G019700 [exp] 238 / 1e-77 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3) Potri.008G036900 [exp] 233 / 3e-76 AT5G04250 239 / 4e-79 Cysteine proteinases superfamily protein (.1.2) Potri.014G140200 [exp] 232 / 4e-75 AT3G02070 358 / 2e-127 Cysteine proteinases superfamily protein (.1) Potri.006G021700 [exp] 227 / 2e-73 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.005G140500 [exp] 64 / 3e-11 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.009G160100 [exp] 50 / 2e-06 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10038708 pacid=23142992 polypeptide=Lus10038708 locus=Lus10038708.g ID=Lus10038708.BGIv1.0 annot-version=v1.0 ATGATTGTCCATGAACAAGATCCTGATGTTGTCCGGTGGGGTCTTCACACTCTGATAGACGTATGTGCAATTCGCAGTAATGGTTCATGTAGTGGTGTTA CTCAGTATGAGGCGGATCAAGGCCAAGTTGGGTATGTTAGTGAGTTCTATAATGAACCGGTATATATCAATAATATAGAGAGCGATGCGGTTATTGCACA CGCTCTGCAGGAAGAGCTTTCACATGTTGCTGCTGCTGAAGCATCTGGTCGTCTTGATACTGGACAAGATTCCATTCTTTCCCAGGACTGGCGTAGTTAT GATCATGAGGATGGTCAGAGAATGGGAGATGCTGATAACAAAAACAAAACAGGGATTCCTCACTCCATGCAAAATGAACCAGATGGGTTTGGCGATAAAA AAGCACAAGACGGTGTTCAAGTTCAAGTTTCAGCTTCTCCATCTTTCCGTCAACAAAATAATCCTAGCATGGAAGACATTCCATATGATATCGACATAGC AGATGAGCATGAAGAGTATGCTCTTGATGGTGAAGTAGGAAAAAGGATTAATCAGATGTTCCCCATTCCTCATGTGCCTAAAATTAATGGAGATATACCG ACACTGGATGAAGAAGTTTCTGATCACCAGAGACTGCTAGACAGGTTGAAGGTATACTTCCTTGTTGAGAACAAGGTTCAAGGAGATGGTAATTGTCAGT TCCGTGCATTATCAGATCAACTATATCGCTCTAGTGACTACCACAAATTTGTGAGGCTGCAGGTCATTGATCAGTTGAGGTCTCATTCAGAAATATACGA GGGATATGTTCCTATGCCTTACAGTGACTATTTGAACAACATCAGCAAGTCAGGAGAGTGGGGTGATCATGTCACACTGCAAGCTGCTGCAGATTCATAT GGCGTGAAGATATTTGTGCTTACTTCTTTCAAGGACACCTGTTACATCGAGATCATCCCCAACGTTGAGAAGTCCAAGCGCATTATATACTTGAGTTTCT GGGCGGAGGTGCATTACAATTCCATATACCCTGAAGGAGAGATACCGTTGGTTGAGGAAAAGAAGAAGAAGAAATGGTGGAAGCTGCTAATCTCCAGTTA A
AA sequence Show only first row Show all	>Lus10038708 pacid=23142992 polypeptide=Lus10038708 locus=Lus10038708.g ID=Lus10038708.BGIv1.0 annot-version=v1.0 MIVHEQDPDVVRWGLHTLIDVCAIRSNGSCSGVTQYEADQGQVGYVSEFYNEPVYINNIESDAVIAHALQEELSHVAAAEASGRLDTGQDSILSQDWRSY DHEDGQRMGDADNKNKTGIPHSMQNEPDGFGDKKAQDGVQVQVSASPSFRQQNNPSMEDIPYDIDIADEHEEYALDGEVGKRINQMFPIPHVPKINGDIP TLDEEVSDHQRLLDRLKVYFLVENKVQGDGNCQFRALSDQLYRSSDYHKFVRLQVIDQLRSHSEIYEGYVPMPYSDYLNNISKSGEWGDHVTLQAAADSY GVKIFVLTSFKDTCYIEIIPNVEKSKRIIYLSFWAEVHYNSIYPEGEIPLVEEKKKKKWWKLLISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04250			Cysteine proteinases superfami...		Lus10038708 [exp]	0	1
AT3G25610			ATPase E1-E2 type family prote...		Lus10019152 [exp]	1.7	0.9013
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10029605 [exp]	3.3	0.9169
AT5G25270			Ubiquitin-like superfamily pro...		Lus10040001 [exp]	4.2	0.9042
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	5.3	0.8989
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012632 [exp]	20.8	0.8886
AT5G04250			Cysteine proteinases superfami...		Lus10037977 [exp]	23.3	0.8831
AT5G58720			smr (Small MutS Related) domai...		Lus10018236 [exp]	23.4	0.8460
AT1G11340			S-locus lectin protein kinase ...		Lus10013910 [exp]	26.2	0.8886
AT1G23230			unknown protein		Lus10035997 [exp]	29.1	0.8625
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004386 [exp]	33.9	0.8944

Compare expression of checked genes

Lus10038708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.