Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67623 91 / 3e-21 F-box family protein (.1) AT1G74875 79 / 2e-17 unknown protein AT2G35280 67 / 2e-13 F-box family protein (.1) AT1G67340 52 / 1e-07 HCP-like superfamily protein with MYND-type zinc finger (.1) AT3G30430 43 / 2e-05 F-box family protein (.1) AT5G50450 43 / 9e-05 HCP-like superfamily protein with MYND-type zinc finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037978 [exp] 427 / 2e-153 AT1G67623 82 / 3e-18 F-box family protein (.1) Lus10030128 [exp] 254 / 1e-85 AT1G67623 71 / 2e-14 F-box family protein (.1) Lus10022147 [exp] 181 / 3e-58 AT1G67623 78 / 5e-18 F-box family protein (.1) Lus10038720 [exp] 180 / 2e-57 ND 41 / 8e-05 Lus10005844 [exp] 169 / 1e-53 AT1G67623 76 / 3e-17 F-box family protein (.1) Lus10023768 [exp] 131 / 1e-38 AT1G74875 66 / 6e-14 unknown protein Lus10006434 [exp] 115 / 8e-31 AT1G67623 61 / 1e-10 F-box family protein (.1) Lus10030790 [exp] 86 / 1e-19 AT1G67623 57 / 4e-09 F-box family protein (.1) Lus10037021 [exp] 50 / 5e-07 AT1G67340 291 / 8e-97 HCP-like superfamily protein with MYND-type zinc finger (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008800 [exp] 181 / 8e-57 AT1G74875 110 / 2e-29 unknown protein Potri.001G321400 [exp] 157 / 3e-47 AT1G67623 102 / 6e-26 F-box family protein (.1) Potri.015G096200 [exp] 62 / 4e-11 AT1G67340 438 / 3e-154 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.012G097600 [exp] 53 / 4e-08 AT1G67340 436 / 2e-153 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.001G056800 [exp] 51 / 3e-07 AT1G67340 499 / 2e-177 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.003G171400 [exp] 45 / 2e-05 AT1G67340 484 / 1e-171 HCP-like superfamily protein with MYND-type zinc finger (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038709 pacid=23143078 polypeptide=Lus10038709 locus=Lus10038709.g ID=Lus10038709.BGIv1.0 annot-version=v1.0 ATGGCCTCATCAATCTCCGACCCCCTCCATCTGGTCACATCCGTCCCTAAGGACATCCTGGTCGACGTCCTCGCCAGGGTAGCCCTCCAATCCTCTGCCG ACCTCATCAGCGCCAAATTGACATGCAAGGCCTTACTAGACGCATCCGCCGACGACTACATCTACCGCCACGTCGCCATCTCCGAATTCCCCCTCATCCC TTGGAAGATCAACCTTCCCGCCTTATCCTTCATCGATCGATGCATAAACAGCGGCAACCCAGAGGCTCTGTTCCGCCGAGGCATGATCGACTTCTTCAGT TCGCTCCAAATTGAATCAGGGCTCGCCAATTTAATGTCTGCAGCCCGGTCAGGTCACCTCGAATCGGTCTACGTTTGCGGCGTCGTTGCGTTGTGCCAGG GCCAAGAGGAGGAAGGGATGGCTTTGCTCCGGTCCATAGACGGCGGCGTTAGCGGACCGCGGTGGCCGGAGATGGTTAAGTATTGTCGGAACAGAGTGAA GTCGGTGAGAGGGGTTATGTGGGTCAGAAATTTCATGGTGGGAGAGCACAATCCGTCAGGGAGGAGGATTAATTGTGACTCTTGCAGAGGCGGCGGGGTT GGATTATTAGCAGCACCGTCGGGAGAAGAAAGGTGGGCGACGAGGGAGGATGAAGAATTGGAAATCTACGCCGCCAAACGCTGTCGGTCTTGCTTTTGGG ACTATGAGGCAGCGTCGTTTCGTAATATGTTGAGATTCGGCACCTTCGTTTCGTGA
AA sequence Show only first row Show all	>Lus10038709 pacid=23143078 polypeptide=Lus10038709 locus=Lus10038709.g ID=Lus10038709.BGIv1.0 annot-version=v1.0 MASSISDPLHLVTSVPKDILVDVLARVALQSSADLISAKLTCKALLDASADDYIYRHVAISEFPLIPWKINLPALSFIDRCINSGNPEALFRRGMIDFFS SLQIESGLANLMSAARSGHLESVYVCGVVALCQGQEEEGMALLRSIDGGVSGPRWPEMVKYCRNRVKSVRGVMWVRNFMVGEHNPSGRRINCDSCRGGGV GLLAAPSGEERWATREDEELEIYAAKRCRSCFWDYEAASFRNMLRFGTFVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67623			F-box family protein (.1)		Lus10038709 [exp]	0	1
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10030588 [exp]	4.0	0.7147
AT4G30660			Low temperature and salt respo...		Lus10036592 [exp]	4.5	0.7405
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10026275 [exp]	5.5	0.7622
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10001656 [exp]	5.9	0.7766
AT2G03810			18S pre-ribosomal assembly pro...		Lus10036829 [exp]	6.3	0.7638
AT5G05670			signal recognition particle bi...		Lus10030593 [exp]	6.9	0.7494
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009018 [exp]	7.5	0.7172
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10036901 [exp]	8.2	0.7082
AT4G35840			RING/U-box superfamily protein...		Lus10041859 [exp]	9.2	0.7597
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10040901 [exp]	9.6	0.7673

Compare expression of checked genes

Lus10038709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.