Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39120 453 / 8e-159 WTF9 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 198 / 9e-59 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 176 / 2e-50 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G24320 165 / 1e-46 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 152 / 4e-41 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 124 / 2e-31 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT1G06440 115 / 2e-28 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 111 / 6e-27 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 108 / 2e-26 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G62990 110 / 4e-26 EMB1692 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037979 [exp] 482 / 3e-172 AT2G39120 308 / 1e-104 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10011327 [exp] 214 / 3e-65 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012201 [exp] 202 / 1e-60 AT5G48040 424 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 192 / 2e-56 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000847 [exp] 174 / 3e-50 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10017896 [exp] 169 / 3e-46 AT1G71850 478 / 7e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10035074 [exp] 168 / 6e-46 AT1G71850 479 / 5e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005750 [exp] 124 / 2e-31 AT1G71850 263 / 9e-85 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10034086 [exp] 119 / 1e-29 AT2G31290 559 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G036600 [exp] 543 / 0 AT2G39120 509 / 0.0 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 212 / 2e-64 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 195 / 2e-57 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.004G223200 [exp] 167 / 5e-47 AT4G24320 437 / 4e-152 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 170 / 2e-46 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 120 / 4e-30 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 120 / 5e-30 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G220000 [exp] 106 / 4e-25 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.015G141700 [exp] 106 / 7e-25 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 103 / 7e-24 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10038710 pacid=23143051 polypeptide=Lus10038710 locus=Lus10038710.g ID=Lus10038710.BGIv1.0 annot-version=v1.0 ATGATCCTCCAGACGCCGAAATGGAAATGCATCAAAACCCTAATCTCAGCTCCCAAAAATCCCATCTTTTCGCTTGTTGAAACCCACCCACGAAAGCTCC CATTTTGGTTCACCCAAACCCAGAGCTACGTCCAGGTATGTATGAAATGGAAGAAAGATCCCTACTTCGATTCCATAGAGCACATCCACAAGTCCACAGA GCTCAAACGCATCCATTCTCTGAAGAACGTTATAGCCCGGAATCCCAATGGTTGCATCCCCATCTCTGACATATCAAAGAAAGGTCTGCAATTTGACTTG AAAATCAAAGTCGCTAGGTATTTGAGGCAATACCCTTCAATCTTCGAGGAGTTTGTTGGGCCCCAACATAATTTGCCATGGTTTAGATTGACCCAGCAAG CAGCTGAGATCGATAGAGAGGAAATGAATATACTGGAGGTTCATCAAGAAGATCTGACGGATAGGCTCAAGAAGTTTATCTTAATGAGTAAAGAAAAGGC ATTGCCTTTGAAGATCATCAAGGGATTGGGATGGTATTTGGGATTTTCTGATGATATGCTGCAGAAGCTTGATGATGGGCCTTTCAGATTAGTGGATTTG GAAGGTGGGTTGAAAGGATTAGCTGTTGAGAGCGAAGAACGAGCTGTATCTGTAGTTCAAAAGAATGCTATGAAAAGAGGAGTGTATTCTGGAGAACCAA TGGAGGCACTAGAGTTTCCTCTCTTTCCATCAAAAGGTTTGAGGCTGAAGAAGAAGATAGCGGATTGGCTCATTGAGTTTCAAAAGCTTCCTTACGTGTC TCCTTATGAGGATTACTCTTATCTGGACACTGACAGTGATATTGCAGAGAAAAGGGTTGTGGGGTTTCTTCATGAGTTGCTTTGTTTATTTGTTGAGCAT TCCGCTGAAAGAAAGAAGCTTTTGTGCCTGAAGAAATATTTTGGGTTGCCACAGAAAGTGCACAAGGCTTTTGAGAGACATCCCCACTTGTTCTACTTGT CTCACAGGAACAAAACCCGTACGGCTATTCTTAAGGAGGCTTATCGTGACGAATCGTCCATAGAGAGACATCCATTGGTGAGTGTTAGACAGAAATATGT TGAATTGATGATGGAGTCCGATAGTATTTTGAAAAGGAGAAGGAGAAGTAGAACAAGTAATCAAGTGGAGGCTGTTGTTGATCATGGGAAGTCCGAGTCT GATCTGGATTGCCACTGTGAAAGCAGGCAAGTGGGAACAGAGTATTCATTAGAAGAATTTGTAGGAAACGACAGTTGA
AA sequence Show only first row Show all	>Lus10038710 pacid=23143051 polypeptide=Lus10038710 locus=Lus10038710.g ID=Lus10038710.BGIv1.0 annot-version=v1.0 MILQTPKWKCIKTLISAPKNPIFSLVETHPRKLPFWFTQTQSYVQVCMKWKKDPYFDSIEHIHKSTELKRIHSLKNVIARNPNGCIPISDISKKGLQFDL KIKVARYLRQYPSIFEEFVGPQHNLPWFRLTQQAAEIDREEMNILEVHQEDLTDRLKKFILMSKEKALPLKIIKGLGWYLGFSDDMLQKLDDGPFRLVDL EGGLKGLAVESEERAVSVVQKNAMKRGVYSGEPMEALEFPLFPSKGLRLKKKIADWLIEFQKLPYVSPYEDYSYLDTDSDIAEKRVVGFLHELLCLFVEH SAERKKLLCLKKYFGLPQKVHKAFERHPHLFYLSHRNKTRTAILKEAYRDESSIERHPLVSVRQKYVELMMESDSILKRRRRSRTSNQVEAVVDHGKSES DLDCHCESRQVGTEYSLEEFVGNDS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39120		WTF9	what's this factor 9, Ubiquiti...		Lus10038710 [exp]	0	1
AT1G13340			Regulator of Vps4 activity in ...		Lus10033552 [exp]	15.3	0.9460
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10040509 [exp]	27.9	0.9398
AT5G05350			PLAC8 family protein (.1)		Lus10001260 [exp]	32.9	0.9143
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10031100 [exp]	33.6	0.9384
					Lus10015339 [exp]	37.9	0.9365
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10019459 [exp]	43.5	0.9354
AT2G23770			protein kinase family protein ...		Lus10000577 [exp]	45.1	0.9343
AT5G45860		RCAR5, PYL11	regulatory components of ABA r...		Lus10003187 [exp]	46.9	0.9345
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10014284 [exp]	48.6	0.9342
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10014708 [exp]	49.4	0.9342

Compare expression of checked genes

Lus10038710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.