Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09830 509 / 7e-180 Protein kinase superfamily protein (.1.2) AT2G39110 507 / 2e-178 Protein kinase superfamily protein (.1) AT5G03320 484 / 6e-170 Protein kinase superfamily protein (.1) AT2G28940 423 / 3e-145 Protein kinase superfamily protein (.1.2) AT3G28690 325 / 4e-108 Protein kinase superfamily protein (.1.2.3) AT5G15080 328 / 1e-107 Protein kinase superfamily protein (.1) AT3G01300 327 / 3e-107 Protein kinase superfamily protein (.1) AT5G47070 322 / 3e-106 Protein kinase superfamily protein (.1) AT1G14370 306 / 5e-100 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT2G02800 304 / 4e-99 Kin2, APK2B protein kinase 2B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037980 [exp] 822 / 0 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016536 [exp] 416 / 2e-142 AT2G28940 576 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040804 [exp] 412 / 8e-141 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10013812 [exp] 340 / 6e-116 AT3G09830 342 / 2e-117 Protein kinase superfamily protein (.1.2) Lus10026524 [exp] 340 / 8e-116 AT3G09830 342 / 2e-117 Protein kinase superfamily protein (.1.2) Lus10040135 [exp] 339 / 2e-113 AT5G47070 456 / 3e-160 Protein kinase superfamily protein (.1) Lus10001088 [exp] 333 / 5e-111 AT5G47070 455 / 4e-160 Protein kinase superfamily protein (.1) Lus10030668 [exp] 320 / 3e-104 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 320 / 3e-104 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G225300 [exp] 593 / 0 AT2G39110 538 / 0.0 Protein kinase superfamily protein (.1) Potri.008G036800 [exp] 591 / 0 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G126000 [exp] 500 / 2e-175 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G031500 [exp] 430 / 4e-148 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G240500 [exp] 423 / 2e-145 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G052700 [exp] 372 / 2e-125 AT5G47070 431 / 2e-149 Protein kinase superfamily protein (.1) Potri.001G149100 [exp] 354 / 3e-119 AT5G47070 496 / 7e-176 Protein kinase superfamily protein (.1) Potri.003G085300 [exp] 338 / 1e-112 AT5G47070 472 / 6e-166 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 331 / 4e-109 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 330 / 2e-108 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038711 pacid=23143021 polypeptide=Lus10038711 locus=Lus10038711.g ID=Lus10038711.BGIv1.0 annot-version=v1.0 ATGGAGTCCTCGTTCTTCGAGTTGCCTTTTCTCCGTTTCAGAGTGGGAAAAGATAACAACAAATTTCCTGCGGTTATGAAGTGTTTCCATTATTTCTCAA GCAAAGACAGAAATGGTGGTGGTGGAGGAGGAGGAGGAAAATCACCATCCACACCGGTGCCGAATTCAATTTCAGGGCGCTCAAATTCTTCTTCGATCTC CATGTCGACCGATCTTGACTTGAGAAGATCTGGGTCTGAATTTAATTCCCAAAACATGTCCGATTTCAGCACAGAATCTTCTGCAAAGAACTCATTCGCT GTATTGTCACAGAGACAACAGAGCAGCAGTCATCTACGGGTTTTCACATTCAGCGAGCTGAAGACGGCCACCAAGAACTTCAGCAGATCGCTCATGATTG GGGAAGGTGGGTTTGGTGGTGTCTACCGAGGCGTGATTAAAAGCACTGTAGAGGTTGGTAAGAAGATTGACATTGCTGTCAAGCAATTGAGCAGAAGAGG CCTCCAGGGACATAAGGAATGGGTTACAGAAGTGAATGTCTTAGGAATCGTTGAACACGAAAATCTGGTAAAGCTGATCGGCTACTGTGCTGAAGATGAT GAAAGAGGCATCCAGAGGCTGTTGGTATACGAGTACATGCCAAACAGGAGTGTGCTGGATCATTTATCAAGTCGGTTTCAGACACCTCTTTCCTGGGCAA CAAGGATGAAGATTGCTCAGGATACAGCCAAGGGATTAGCTTACCTCCATGAGGGAATGGATTTCCAGATCATCTTCAGAGATTTCAAGTCATCCAACAT ACTTCTGGATGAGGAATGGAATGCAAAGTTGTCAGATTTTGGGCTAGCGAGGCTGGGGCCTTCTGAAGGATTGAGTCACGTTTCAACTGCAGTGGTGGGT ACGATTGGATATGCAGCGCCAGAGTATATACAAACGGGACGCCTAACATCCAAAAGTGATGTGTGGAGCTACGGTGTCTTCCTTTATGAACTCATAACGG GGAGGCGTCCCTTAGACCGGAACAAGCCCAAGAATGAGCAGAAGCTGTTGGAATGGGTGAGGCAACACCTGTCTGATATGAGGAAATTCAGATTAATTCT GGATCCCAAACTGGAAGGGAAGTACGATCTCAAGTCTGCCCAGAGGCTGGCTGCTGTAGCCAACAGGTGCTTGCTGAGACAGGCTAAAGCGCGTCCCAAG ATGAGCGAAGTAGTCGAGATGCTCAACAAAATTATGGATTCAGCACAACTTGGAACTAGCCCCCAACTGCCCATGAAGACATTGAGAGATCCTGAATCTT CCATACGGAATAGTATTAACCGAAGGTTTGCCAAGGCAAAAATCGGAGACAAAGGGTTTTCCTATAGGAGCATATGGAGGCCAAAGTGTTTTAGAGCATC ATGA
AA sequence Show only first row Show all	>Lus10038711 pacid=23143021 polypeptide=Lus10038711 locus=Lus10038711.g ID=Lus10038711.BGIv1.0 annot-version=v1.0 MESSFFELPFLRFRVGKDNNKFPAVMKCFHYFSSKDRNGGGGGGGGKSPSTPVPNSISGRSNSSSISMSTDLDLRRSGSEFNSQNMSDFSTESSAKNSFA VLSQRQQSSSHLRVFTFSELKTATKNFSRSLMIGEGGFGGVYRGVIKSTVEVGKKIDIAVKQLSRRGLQGHKEWVTEVNVLGIVEHENLVKLIGYCAEDD ERGIQRLLVYEYMPNRSVLDHLSSRFQTPLSWATRMKIAQDTAKGLAYLHEGMDFQIIFRDFKSSNILLDEEWNAKLSDFGLARLGPSEGLSHVSTAVVG TIGYAAPEYIQTGRLTSKSDVWSYGVFLYELITGRRPLDRNKPKNEQKLLEWVRQHLSDMRKFRLILDPKLEGKYDLKSAQRLAAVANRCLLRQAKARPK MSEVVEMLNKIMDSAQLGTSPQLPMKTLRDPESSIRNSINRRFAKAKIGDKGFSYRSIWRPKCFRAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09830			Protein kinase superfamily pro...		Lus10038711 [exp]	0	1
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10034598 [exp]	1.0	0.8945
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10030667 [exp]	2.8	0.8376
AT4G28290			unknown protein		Lus10018592 [exp]	2.8	0.8519
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10009958 [exp]	3.0	0.8527
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	4.2	0.8628
					Lus10024821 [exp]	7.4	0.8432
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10011578 [exp]	9.6	0.8045
AT4G30780			unknown protein		Lus10035819 [exp]	10.5	0.8314
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	10.6	0.8404
AT1G59710			Protein of unknown function (D...		Lus10013281 [exp]	13.5	0.8282

Compare expression of checked genes

Lus10038711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.