Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60740 1274 / 0 ABCG28 ATP-binding cassette G28, ABC transporter family protein (.1) AT2G37010 1256 / 0 ATNAP12 non-intrinsic ABC protein 12 (.1) AT1G53390 1248 / 0 ABCG24 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G25620 204 / 8e-57 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT1G31770 201 / 4e-54 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G21090 192 / 6e-51 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G17840 192 / 7e-51 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT4G27420 190 / 2e-50 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT1G51500 188 / 1e-49 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G53270 185 / 3e-49 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037981 [exp] 2288 / 0 AT1G53390 1330 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016115 [exp] 1274 / 0 AT5G60740 1639 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10041325 [exp] 1226 / 0 AT5G60740 1548 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10021448 [exp] 1201 / 0 AT5G60740 1559 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10023020 [exp] 1110 / 0 AT2G37010 1484 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10023199 [exp] 815 / 0 AT2G37010 1141 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10034775 [exp] 221 / 7e-61 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033315 [exp] 208 / 1e-58 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 212 / 2e-58 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G225200 [exp] 1544 / 0 AT1G53390 1393 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G058900 [exp] 1347 / 0 AT5G60740 1672 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.003G169000 [exp] 1339 / 0 AT5G60740 1643 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.006G126100 [exp] 1279 / 0 AT2G37010 1377 / 0.0 non-intrinsic ABC protein 12 (.1) Potri.004G236500 [exp] 219 / 2e-60 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 211 / 1e-57 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.010G131900 [exp] 203 / 1e-54 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.001G404000 [exp] 192 / 1e-51 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.013G111900 [exp] 192 / 3e-51 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.011G123200 [exp] 191 / 7e-51 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10038714 pacid=23143068 polypeptide=Lus10038714 locus=Lus10038714.g ID=Lus10038714.BGIv1.0 annot-version=v1.0 ATGGATTTCGGAGGGTTGATTCTGATATTGGGAGTTTGTTTTCTGAGCTTTCAGTGCTTTTTAGGACAGTGTCAAGATATGCAGGGCGACTACAGTGCAT ATGCTGACGACGCGTCTCTTCGTCCACTCATGGCGGAGTATGCCTATAGCAAGATGTCTAATCTCACTGCTAATATCACCAGAGTTCTTGGGAAGCAGGC CAGCTTCTGCATGAAGGACCCGGATGCTGATTGGAATCGAGCCTTCAACTTCTCCTCCAATCTGGATTTCTTGTCTAATTGCATACTACAGACCAGAGGA GATATGATGCGACGCATCTGTAGTGAATCAGAAATGAAATTCTACTTCAATACGCTGATGGAGTCGGATGAGACGCGAAAGAAGGAGGGTGCCAACTATC TAAGGCCAAACCTCAACTGCAATCTAACCAGTTGGGTTTCTGGATGTGAACCTGGGTGGGCTTGCAGTGTTGGTGGGACTCAACCTGTCGACCTTCAAAA CTCACTCGTCATTCCTCCAAGAACTAGCAACTGCCAGACTTGTTGCGAAGGTTTCTTTTGCCCACATGGACTTACTTGTATGATACCTTGTCCATTGGGT TCTTATTGCCCGCATGCAACTCTCAATAAGGCAACTGCTGTATGTGAACCTTATAATTATCAATTACCCCCAGGGCAACCAAACCATACCTGTGGAGGAG CAAACACATGGGCTGACATTACCACTAGCAGTGAGATATTCTGTGCAGCCGGCTCATACTGTCCAACTACCATTCAGCAGAATGCTTGTAGCAACGGACA TTTTTGCAGAATGGGTGCCACATCTGAGACACGTTGCTTTAAGTTGGCATCCTGTGATTCCAAAACAACAACTCAAAATATTCATGCATATGGTGTCATG GTTATAGTTGCTTTAAGTACAGTGTTACTCATGATCTACAACTGCTCTGATCAAGTTCTGGCGATTCGAGAGAGGAGACTGGCAAAATCTAGGGAAGCAG CAGCAGTAAGTGCACGGGAAACAGCAAAAGCACGCCAAAGATGGAAATCTGCAAAAGGTGCAGCTAGGAAGCGTGCTGGTGGACTGCAGGCTCAGCTCTC TCAAACATTTTCCAGGAAGAAATATACTGCACCTACTGAACAACTTACGGTTATGAATCAAGCCAAGACTGATGATAATGATGGATATTCTACCGATCGA TCAGGTGCTCCACCATTTACCCCAGAAATCAGAAAGGAACTTTCTCAGGCTCAGCTTCCTCAAACATCTTCGAGAAATAAATTTTCTCAAGACCAACCCA AGTCTGATGGAGATTCTAATTCATATGCAGCATCTGCTTCATCTATGCCAGAAAGTGGAGGGAAAAAGGAACATTCCCACCGTATACATTCGGTACTGGA ACTTGATGTCGACTTTGATAGTCATGAAAGTTCAATTATTGACATGGACGATCCAGATCCTAAGGGGCATAAACAGAAGAAGGGAAAAGACTTGAGTACA GATAGTCAAATTTTTAAGTATGCGTATTCACAACTTGAGAGGGAAAAGGCAATGCAGCAACAAACCAAGAACCTCACTTTTTCAGGTGTAGTTAAAATGG CTGCTGGTGGTCATCAAGTGAAGAAAAGACCTCTGATTGAGATTTCATTTAACGACCTTACCTTAACTTTGAAAAACCAAAAGAAGCACCTTTTAAGGTG TGTGACTGGGAAAATCAAGCCTGGCCGAATCACAGCTGTCATGGGTCCATCAGGAGCTGGGAAGACAACCTTTCTTTCTGCTCTAGCTGGGAAGGCCTTA GGGTGTAGGATTTCTGGTACGATTCTCATAAATGGGAAACCTCAATCCATCCACTCGTATAAGAGAATTATTGGTTTCGTTCCACAAGATGATATTGTGC ATGGGAACTTGACAGTTGAAGAGAATCTCTGGTTCAGTGCCCACTGCAGGCTATCAGCTGACTTGCCGAAGGCAGAAAAGGTTCTAATAGTTGAAAGAGC TATTGAGTCTTTGGGGCTTCAAGGAGTGAGAAATTCTGTTGTTGGGACAGTTGAAAAACGAGGAATTTCTGGAGGACAGAGGAAGCGTGTAAATGTTGGA CTAGAAATGGTTATGGACCCTTCCCTTTTACTCTTAGATGAACCTACGTCAGGTCTGGACAGTGCATCATCTCAGCTACTTATCAGAGCACTTCGTCGCG AAGCTCTTGAGGGTGTCAATATACTGATGGTTGTTCACCAACCTAGCTATTCCCTGTTCAAAATGTTCGATGACTTGGTACTTCTGGCAAGAGGAGGACT AACTGTGTACCATGGACCGGTTGTGAAAGTCGAAGGGTACTTTGATGGCCTTGGGATCAATGTCCCCGGCCGTATTAATCCTCCTGACCATTATATTGAC ATTTTGGAGGGTATTGTAAAACCGAGTGCAAGCTCAGGGGCTAACTATATGGACCTTCCTCTAAAATGGATGATGAACAAGGGGTACCCTATTCCACCTG ACATGAAGGAGAACACTCCTGGACTACTTATGCCTCCATTGAACAGAATTCCAAGTGTCGTGCAACTTGGTGATGGAGATGAGGACCAGTCGTTTGCTGG GGAACTATGGGAAGATGTGAAGAGCAATGTTGAGGTTCGACGTGACAGAATTCTCCGTAACTTCTTAAAGCCCAGGGATCTGTCAAACCGTAGAACTCCA GGTGTATGGACACAGTTCAGATACTACCTTGGAAGGGTGTTTAAGCAACGACTAAGAGAGGCCAAAATGCAAGCAGTAGACTTGCTCATTCTTTTCCTGG CTGGAGCTTGCCTAGGGTCCCTTGGAAAAGCAAATGACAAAAACATGGGATCAGCTGGTTATTCACATACTATCATTGCAGTTTCTCTGCTTTGTAAAAT AGCAGCTTTGAGATCATTTTCTCTGGACAGACTACAATACTGGAGGGAGAGTGCCTCTGGCATGAGCAGCCTTGCTTACTTTCTAGCCAAGGATACAGTT GATCATTTTAATACAGCGGTCAAGCCTGTTGTGTATCTCTCCATGTTCTATTTCTTCACCAACCCAAGATCAAGCTTTGCAGATAACTACATTGTATTGA TTTGCCTTGTCTATTGTGTCACCGGGATTGCCTATGCTTTGGCCATCTTTTTTGCAGCAGGTCCTGCCCAGCTGTGGTCGGTTCTTCTTCCTGTAGTTTT GACTCTCATTGCAACCCAGCAAAAGCCCAACAAGATCTTGAAGTTCATATCTAACTTCTGCTACCCTAGATGGGCCCTTGAAGCTTTTGTCATTGCAAAT GCAGAGAGGTACGATGGAGTATGGCTGCTTACTCGTTGTGGCGCACTAATGAACAGCGGCTACAATGTACATGACTGGATTCTTTGCATATGCGTCCTCC TCCTCTTTGGTTTAGTTGCTCGGATTGTGGCATTCTTTGGCTTGTTGACAGTTGGCCGAAGGCGCTGA
AA sequence Show only first row Show all	>Lus10038714 pacid=23143068 polypeptide=Lus10038714 locus=Lus10038714.g ID=Lus10038714.BGIv1.0 annot-version=v1.0 MDFGGLILILGVCFLSFQCFLGQCQDMQGDYSAYADDASLRPLMAEYAYSKMSNLTANITRVLGKQASFCMKDPDADWNRAFNFSSNLDFLSNCILQTRG DMMRRICSESEMKFYFNTLMESDETRKKEGANYLRPNLNCNLTSWVSGCEPGWACSVGGTQPVDLQNSLVIPPRTSNCQTCCEGFFCPHGLTCMIPCPLG SYCPHATLNKATAVCEPYNYQLPPGQPNHTCGGANTWADITTSSEIFCAAGSYCPTTIQQNACSNGHFCRMGATSETRCFKLASCDSKTTTQNIHAYGVM VIVALSTVLLMIYNCSDQVLAIRERRLAKSREAAAVSARETAKARQRWKSAKGAARKRAGGLQAQLSQTFSRKKYTAPTEQLTVMNQAKTDDNDGYSTDR SGAPPFTPEIRKELSQAQLPQTSSRNKFSQDQPKSDGDSNSYAASASSMPESGGKKEHSHRIHSVLELDVDFDSHESSIIDMDDPDPKGHKQKKGKDLST DSQIFKYAYSQLEREKAMQQQTKNLTFSGVVKMAAGGHQVKKRPLIEISFNDLTLTLKNQKKHLLRCVTGKIKPGRITAVMGPSGAGKTTFLSALAGKAL GCRISGTILINGKPQSIHSYKRIIGFVPQDDIVHGNLTVEENLWFSAHCRLSADLPKAEKVLIVERAIESLGLQGVRNSVVGTVEKRGISGGQRKRVNVG LEMVMDPSLLLLDEPTSGLDSASSQLLIRALRREALEGVNILMVVHQPSYSLFKMFDDLVLLARGGLTVYHGPVVKVEGYFDGLGINVPGRINPPDHYID ILEGIVKPSASSGANYMDLPLKWMMNKGYPIPPDMKENTPGLLMPPLNRIPSVVQLGDGDEDQSFAGELWEDVKSNVEVRRDRILRNFLKPRDLSNRRTP GVWTQFRYYLGRVFKQRLREAKMQAVDLLILFLAGACLGSLGKANDKNMGSAGYSHTIIAVSLLCKIAALRSFSLDRLQYWRESASGMSSLAYFLAKDTV DHFNTAVKPVVYLSMFYFFTNPRSSFADNYIVLICLVYCVTGIAYALAIFFAAGPAQLWSVLLPVVLTLIATQQKPNKILKFISNFCYPRWALEAFVIAN AERYDGVWLLTRCGALMNSGYNVHDWILCICVLLLFGLVARIVAFFGLLTVGRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Lus10038714 [exp]	0	1
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Lus10037981 [exp]	2.4	0.8638
AT3G51870			Mitochondrial substrate carrie...		Lus10004820 [exp]	8.8	0.8320
AT3G57630			exostosin family protein (.1.2...		Lus10042357 [exp]	11.7	0.7991
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10000884 [exp]	11.7	0.8036
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10021147 [exp]	21.2	0.7781
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	21.6	0.8195
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	22.2	0.8148
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10009236 [exp]	26.2	0.8204
AT3G52030			F-box family protein with WD40...		Lus10005328 [exp]	26.3	0.7868
AT3G04480			endoribonucleases (.1)		Lus10008194 [exp]	28.8	0.7910

Compare expression of checked genes

Lus10038714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.