Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10350 607 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60730 407 / 5e-141 Anion-transporting ATPase (.1) AT1G01910 135 / 5e-36 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037982 [exp] 759 / 0 AT3G10350 620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021449 [exp] 412 / 1e-143 AT3G10350 434 / 2e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041377 [exp] 120 / 2e-30 AT1G01910 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10036552 [exp] 120 / 2e-30 AT1G01910 576 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G037100 [exp] 617 / 0 AT3G10350 592 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G225100 [exp] 615 / 0 AT3G10350 599 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G078100 [exp] 130 / 3e-34 AT1G01910 580 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.002G152500 [exp] 129 / 1e-33 AT1G01910 590 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02374 [flax] [poplar] ArsA_ATPase Anion-transporting ATPase
Representative CDS sequence Show only first row Show all	>Lus10038715 pacid=23143034 polypeptide=Lus10038715 locus=Lus10038715.g ID=Lus10038715.BGIv1.0 annot-version=v1.0 ATGGCATCAACCACTACAATGTCTTGTTCCACTATTTCTTCTTCTTCATCTTCTTCCACTTCTCTGGGGAAGGTTTTCTTCGCAACCAACTCCAGGATCG GTGCGGTGGGTTTCCTCTCTTTCCCGCCCAAGTTCCAGGCGCCCACGCTTCTTTCGACAAGCTCCTTTTCTTGGAATTCAACCAAGCGAAAAAATTCCAG GAATATACTCCAAGTGAGATCGGTGGCTGCTCCAATTGAAGATGTGGCTGGGTTCGATGATATGGTTTCTGGAACTCGACGGAAGTACTACATGCTTGGT GGAAAGGGTGGTGTAGGAAAAACTAGCTGTGCTGCTGCGCTTGCTGTGAAGTTTGCAAATAGTGGGCATCCTACTTTAGTTGTATCAACAGATCCAGCAC ATTCTCTGAGTGATTCTTTTGCACAGGATTTAACAGGAGGCACACTAGTACAGGTCGAGGGACCAGATTCCCCACTTTTTGCACTCGAGCTGAACCCAGA GAAAGCCAGAGAAGAATTCCGTACTGCATCTCAGAGTAATGATGGGACAGGTGTCAAAGATTTCATGGAAGGAATGGGACTTGGAATGCTTGTTGAACAG TTAGGAGAATTGAAATTGGGAGAGCTACTCGACACACCTCCTCCTGGTTTGGATGAAGCTATTGCGATTTCAAAAGTGATACAATTTCTAGAGTCGCCGG AATACAACATGTTTACTCGAATAGTTTTTGATACAGCACCAACAGGTCATACATTGCGACTTCTGTCTTTGCCTGACTTCCTAGATGCATCTATAGGGAA GATTTTGAAGCTTAAACAAAAAATATCATCTGCTACATCTGCTATCAAATCTGTTTTTGGACAAGAACAACCTCGACAGGATGCTTCCGATAAGTTGGAG AAGCTGAGGGAAAGGATGGTAAAAGTACGCGAACTGTTTCGTGATGAGGACTCTACTGAATTTGTCATAGTGACAATCCCTACGGTAATGGCAGTGAGTG AATCTTCTCGATTGCGCGCCTCCTTGGAGAAGGAGAATGTACCTGTCAAAAGGCTTATTGTAAATCAAATCCTTCCCCCAGCTGTCTCTGACTGCAAATT TTGTGCCATGAAAAGGAAGGATCAGATGCGTGCCCTTGATATGATAGGGAATGATTCTGAACTGCAGAGCTTGAGATTGATCAAAGCACCTTTAGTTGAT GTAGAGATCAGAGGTGTTCCAGCTCTTAAGTTTATCGGTGACATCATATGGAAATAA
AA sequence Show only first row Show all	>Lus10038715 pacid=23143034 polypeptide=Lus10038715 locus=Lus10038715.g ID=Lus10038715.BGIv1.0 annot-version=v1.0 MASTTTMSCSTISSSSSSSTSLGKVFFATNSRIGAVGFLSFPPKFQAPTLLSTSSFSWNSTKRKNSRNILQVRSVAAPIEDVAGFDDMVSGTRRKYYMLG GKGGVGKTSCAAALAVKFANSGHPTLVVSTDPAHSLSDSFAQDLTGGTLVQVEGPDSPLFALELNPEKAREEFRTASQSNDGTGVKDFMEGMGLGMLVEQ LGELKLGELLDTPPPGLDEAIAISKVIQFLESPEYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLKQKISSATSAIKSVFGQEQPRQDASDKLE KLRERMVKVRELFRDEDSTEFVIVTIPTVMAVSESSRLRASLEKENVPVKRLIVNQILPPAVSDCKFCAMKRKDQMRALDMIGNDSELQSLRLIKAPLVD VEIRGVPALKFIGDIIWK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10350			P-loop containing nucleoside t...		Lus10038715 [exp]	0	1
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10015345 [exp]	1.4	0.8647
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10011115 [exp]	1.7	0.8717
AT5G61450			P-loop containing nucleoside t...		Lus10031163 [exp]	2.4	0.8591
AT1G21760		ATFBP7	F-box protein 7 (.1)		Lus10029676 [exp]	4.6	0.8439
AT4G17740			Peptidase S41 family protein (...		Lus10004402 [exp]	7.3	0.8454
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10011940 [exp]	7.3	0.8393
AT2G43630			unknown protein		Lus10010586 [exp]	8.2	0.8302
AT5G46390			Peptidase S41 family protein (...		Lus10004601 [exp]	9.2	0.8370
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	9.4	0.8438
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	11.0	0.8323

Compare expression of checked genes

Lus10038715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.