Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57120 385 / 6e-130 Protein kinase superfamily protein (.1) AT1G51940 149 / 9e-39 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 137 / 2e-34 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT4G04540 125 / 2e-30 CRK39 cysteine-rich RLK (RECEPTOR-like protein kinase) 39 (.1) AT2G33580 123 / 1e-29 Protein kinase superfamily protein (.1) AT4G04570 122 / 2e-29 CRK40 cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.2) AT5G38560 121 / 4e-29 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT5G48740 117 / 1e-27 Leucine-rich repeat protein kinase family protein (.1) AT1G52290 115 / 2e-27 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24550 114 / 6e-27 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016113 [exp] 365 / 7e-121 AT3G57120 447 / 8e-154 Protein kinase superfamily protein (.1) Lus10021451 [exp] 203 / 2e-62 AT3G57120 259 / 4e-85 Protein kinase superfamily protein (.1) Lus10011517 [exp] 182 / 5e-52 AT3G57120 182 / 2e-52 Protein kinase superfamily protein (.1) Lus10027054 [exp] 181 / 5e-52 AT3G57120 213 / 2e-64 Protein kinase superfamily protein (.1) Lus10011518 [exp] 171 / 1e-47 AT3G57120 173 / 6e-49 Protein kinase superfamily protein (.1) Lus10037586 [exp] 158 / 1e-41 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 157 / 2e-41 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10026689 [exp] 139 / 4e-35 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10004625 [exp] 139 / 5e-35 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G037501 [exp] 497 / 2e-174 AT3G57120 411 / 3e-141 Protein kinase superfamily protein (.1) Potri.010G224900 [exp] 488 / 1e-170 AT3G57120 414 / 2e-142 Protein kinase superfamily protein (.1) Potri.008G037401 [exp] 468 / 5e-163 AT3G57120 371 / 2e-125 Protein kinase superfamily protein (.1) Potri.009G009600 [exp] 392 / 4e-133 AT3G57120 444 / 6e-154 Protein kinase superfamily protein (.1) Potri.001G190200 [exp] 157 / 2e-41 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G081601 [exp] 145 / 2e-37 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 143 / 1e-36 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G156400 [exp] 140 / 9e-36 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.008G187500 [exp] 140 / 1e-35 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 137 / 1e-34 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10038716 pacid=23143121 polypeptide=Lus10038716 locus=Lus10038716.g ID=Lus10038716.BGIv1.0 annot-version=v1.0 ATGATCTTCCGGATGTGTAAGTCCAGAAAGAACACTGAGATCCTCCTACCTTCTTCCAGAACCCCCACCAAGCCTTCTTCTTTCTCCTCTTCTTCCTCTT CTTCGTTCCCAAATCCTCCTTCTGCAACTAATTACTCATCCAATTTCGACGCCTCCAAAGCTTCCTCCTCCTCCAGCAAGACCTCTCTCGCCAGCCTCCG CGACTCTCTACCCGAAAACCCCATCATTTACGACTCCTCCGAGATCTCCGGAGCTACCCATAATTTCTTGCTCAAACCCTTCTCCTCTTCCTCCACTTCC ACCTCCTGGCGTTGCTCCATTCGCGGCAGGGAAGTGGTCCTCTTCCAACGCAAGCTCCGCCGCCCTTTGGACTCGTCTGAATTGCAGGATAGGTTACTGA TCATAAGCCGCAGCCATTACAGCAGCCTGGTTAAGCTTCTGGGCGCGTCCATCTCCGGGAGGTATGTTTATTTGGTGTATGAGTACATCCCTGGAGCCAA TTTAGCTAATTGTCTTAGGAACCCGCAAAACCCTAGCTTCACTGTACTCTCCACTTGGCTCTCCCGGATGCAGATCGCCACCGATGTGGCTCACGGCCTC GATTACATCCACCATTGCTCAGGTTTGAACACCAATTACGTCCACAATCATGTCAAGAGTTCGAGCATTTTGGTAACCGAAACCCACCCTCTGAATGCGA AAATCTGCCATTTTGGGACATCAGAGTTGTGTGGGGAAATGGATTTAGTGGCCAGTGGTGGGGGCGATGAGTCAAAGACAACAACAACAACAACAACACA GAAGAGGGGTGGAAAAGCTAGAGGGATGAAGATAGAAGGAACCAGGGGTTACATGGCTCCTGAGTTCCAGGCTAGAGGAGTAGTTACTCAGAAATGTGAT GTTTATGCGTTTGGGGTTGTGATTCTTGAGCTGTTGTCTGGTGAGCAGGCGTTGAGGTATGAGTTTGATGAAGGCGGCGAAGGGTTTCGGAGAATCAGTG TTGTTGAGATGGCTAAAGAGGCGGTGGCAGGGGGTGGGGCTGGGCTGAGGAAATGGGTGGATGGGAGGCTAAAGGACTCATTTCCGGTTGATATAGCGGA GAAGATGGTTTCGATCGGGTTAGAATGTGTGGAGGAGGATCCAGAGAAGCGGCCACTTATGGAGAAGGTTTCTGTTAGAGTGTCTAAGCTGTATCTGGAA TCCAAGAATTGGGCTGAGAAGATTGGTGTGCCAACAGACTTCTCAGTTTCATTTGCTCCCAGGTTCATATATTATACAGCTTTGTGCTTTGATGAGGAAT GCAGCTTTTGTAGTGCCGGTTTACCGTTGAATATCGAACCCTTCTTGTTTGAAGTTGGGTTTGAACTTGGGAATAAGGATGATATGGAGAAGAGGAGCTC TGCCTGGCTTAGTGAGTATAGATTGACATCACCAAGTCCAAATGAAACTCTCAGTGGTCAAAATGATGCTGCGGGCTGGCCTTGGCCCATATGA
AA sequence Show only first row Show all	>Lus10038716 pacid=23143121 polypeptide=Lus10038716 locus=Lus10038716.g ID=Lus10038716.BGIv1.0 annot-version=v1.0 MIFRMCKSRKNTEILLPSSRTPTKPSSFSSSSSSSFPNPPSATNYSSNFDASKASSSSSKTSLASLRDSLPENPIIYDSSEISGATHNFLLKPFSSSSTS TSWRCSIRGREVVLFQRKLRRPLDSSELQDRLLIISRSHYSSLVKLLGASISGRYVYLVYEYIPGANLANCLRNPQNPSFTVLSTWLSRMQIATDVAHGL DYIHHCSGLNTNYVHNHVKSSSILVTETHPLNAKICHFGTSELCGEMDLVASGGGDESKTTTTTTTQKRGGKARGMKIEGTRGYMAPEFQARGVVTQKCD VYAFGVVILELLSGEQALRYEFDEGGEGFRRISVVEMAKEAVAGGGAGLRKWVDGRLKDSFPVDIAEKMVSIGLECVEEDPEKRPLMEKVSVRVSKLYLE SKNWAEKIGVPTDFSVSFAPRFIYYTALCFDEECSFCSAGLPLNIEPFLFEVGFELGNKDDMEKRSSAWLSEYRLTSPSPNETLSGQNDAAGWPWPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57120			Protein kinase superfamily pro...		Lus10038716 [exp]	0	1
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Lus10009057 [exp]	2.8	0.8049
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010037 [exp]	5.0	0.7762
AT5G18130			unknown protein		Lus10005702 [exp]	5.3	0.8032
AT5G18130			unknown protein		Lus10020284 [exp]	5.7	0.7883
AT3G22380		TIC	time for coffee (.1.2)		Lus10002447 [exp]	6.5	0.7551
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10000963 [exp]	13.2	0.7883
AT5G42440			Protein kinase superfamily pro...		Lus10001120 [exp]	16.4	0.7681
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10019625 [exp]	16.5	0.7565
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10041918 [exp]	19.0	0.7525
AT5G42440			Protein kinase superfamily pro...		Lus10015344 [exp]	19.9	0.7471

Compare expression of checked genes

Lus10038716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.