Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65940 548 / 0 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30650 516 / 0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30660 505 / 1e-177 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G31810 322 / 1e-105 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G60510 321 / 3e-105 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT1G06550 290 / 2e-93 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G24360 197 / 2e-57 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2) AT4G13360 193 / 6e-56 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G43280 67 / 2e-12 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT1G60550 64 / 8e-11 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010685 [exp] 319 / 3e-104 AT4G31810 575 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007422 [exp] 318 / 6e-104 AT4G31810 568 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10028182 [exp] 298 / 4e-97 AT3G60510 453 / 6e-160 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10020758 [exp] 272 / 3e-86 AT1G06550 602 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007334 [exp] 271 / 8e-86 AT1G06550 595 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10042883 [exp] 258 / 7e-82 AT4G31810 394 / 4e-137 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10019396 [exp] 198 / 1e-57 AT4G13360 607 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10043253 [exp] 176 / 7e-49 AT4G13360 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10010366 [exp] 112 / 2e-28 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G179000 [exp] 575 / 0 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004200 [exp] 422 / 6e-145 AT5G65940 430 / 2e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004150 [exp] 421 / 1e-144 AT5G65940 428 / 6e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.006G277300 [exp] 414 / 6e-142 AT5G65940 397 / 1e-137 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004100 [exp] 412 / 3e-141 AT5G65940 393 / 6e-136 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.010G170200 [exp] 396 / 7e-134 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.001G156900 [exp] 340 / 2e-112 AT3G60510 432 / 9e-151 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.014G057400 [exp] 336 / 7e-111 AT3G60510 520 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.018G018800 [exp] 320 / 1e-104 AT4G31810 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.002G057700 [exp] 278 / 2e-88 AT1G06550 592 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10038717 pacid=23142991 polypeptide=Lus10038717 locus=Lus10038717.g ID=Lus10038717.BGIv1.0 annot-version=v1.0 ATGATGAAAAGGATGTCGTGGACTACATGCACAAATGATGTGGTTGGTTGTTTAATTACAATTGTTGCCTTCTTTTTTGGTTCGAGAGATTCTCTGGTAT GTGATTTCATGGATCACCTCAACAAACTGTACAGGAATGACTTTGACAGCTTGAAATCAAGGCAGTACATAACCACAGCAGTGCTGGATTCATTTGTGCA TCTAATCAACCGGGAAACGGTCCAAAAGCATCAAATCTTGACACGATTCTGCTTCCCCCTAGAAGTCGTTAACGCAGTTAGGTTAGAGGTTCTTGTTATA GGAGTTGGAGATGTAAAGAAGCCACTCCAAATTTGGATTGATAGGGATAATGTCCCATACATTGATGACAAGAATTTCCAGCACTGTGACTATGTAAGAA TTCTCATGAACCTCATCTTTTTCCCGATCAATGGTGGTAGTCTTCGTGATAATCACTACTATGTATTCGTCATCGACTTCAAGAACAAGCAGAAGGTTCT GGTGGAAGAAAAGTCATCCGCGAGAACGTTAGTGTTAAATAGGCCTAAACAACTGAATGCTCTTTCCTTTCAGATGGTTTCTCGGCTTTTAGAACTTTTC CTTGTTTATGAGGCGGATCCTAATGTCAAATTAATTATTCTCAAGGGAAAAGGAAGAGCATTTTGTGCTGGTGGTGATGTGGCTGCTGTTGTTCATGATA TCCAGAAAGGTACCTGGAAAGCAGGGGCCAATTACTTTGCAAAGGAATTCAGGTTGAATTATTTGATCGCAACATACACCAAGCCCCAGGTTTCTATCCT TAACGGAATTGTTATGGGAGGAGGAAATGGTGCTTCTATGCATGGAAAATTTCGTGTTGCCACTGAAACTTCGGTATTTGCTATGCCTGAAACAGCTTTA GGGCTCTTCCCTGATGTTGGTGCCTCATATTTCTTGTCCAGACTTCCAGGATTCTTTGGTGAATATGTTGGACTTACTGGAGCACGGCTTGATGGTGCTG AAATGCTTGCATGTGGCCTTGCGACTCATTTTGTCCCTTCAGCGAAATTGAATCTGCTTGAAGAAGAACTATACAAGGTAGATTCAAGTGATTCAGCCGT CATTTCTGCAATTATTGACCGCTATTCTCAGCAACCATGCTTGAAAGACCAAAGTGCTTATAAGCGTTTAGATGTCATTGATAGATGCTTCTCTCGGAGA ACAGTTGAAGATATCTTGGCTGCCCTTGAAAGTGAAGCAATGATTAAGGCAGATGATTGGGTTGGTAAAGCTATTCAGTCGCTCAAGAAGGCTTCTCCAA CAAGTCTTAAAATCTCTCTTAGATCAATTCGAGAAGGAAGGATCCAAGGTGTTGGTCAATGTCTTACTCGGGAATTTCGAATGGTTTGTCATGTTGTGGA AGGAAAGCTAAGCAAGGACTTCTTTGAGGGGTGCAGGGCCATACTGTTGGACAAGGATAGGAACCCAAAGTGGGAACCTGCTAAATTAGAGCTTATCAAT GAGGGTATGGTTGATGAATACTTCTCGAGAATGGATGATGCAGATTGGGAGGATCTAAACCTTCCTTCTAGGTCCAAATTTGTTCTGCCTGGAAACGCCA TAGCGAAACTGTGA
AA sequence Show only first row Show all	>Lus10038717 pacid=23142991 polypeptide=Lus10038717 locus=Lus10038717.g ID=Lus10038717.BGIv1.0 annot-version=v1.0 MMKRMSWTTCTNDVVGCLITIVAFFFGSRDSLVCDFMDHLNKLYRNDFDSLKSRQYITTAVLDSFVHLINRETVQKHQILTRFCFPLEVVNAVRLEVLVI GVGDVKKPLQIWIDRDNVPYIDDKNFQHCDYVRILMNLIFFPINGGSLRDNHYYVFVIDFKNKQKVLVEEKSSARTLVLNRPKQLNALSFQMVSRLLELF LVYEADPNVKLIILKGKGRAFCAGGDVAAVVHDIQKGTWKAGANYFAKEFRLNYLIATYTKPQVSILNGIVMGGGNGASMHGKFRVATETSVFAMPETAL GLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSAKLNLLEEELYKVDSSDSAVISAIIDRYSQQPCLKDQSAYKRLDVIDRCFSRR TVEDILAALESEAMIKADDWVGKAIQSLKKASPTSLKISLRSIREGRIQGVGQCLTREFRMVCHVVEGKLSKDFFEGCRAILLDKDRNPKWEPAKLELIN EGMVDEYFSRMDDADWEDLNLPSRSKFVLPGNAIAKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Lus10038717 [exp]	0	1
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10005058 [exp]	2.2	0.7616
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	2.6	0.7868
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Lus10010210 [exp]	8.1	0.7696
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	13.9	0.7577
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Lus10035146 [exp]	15.1	0.6825
AT2G38000			chaperone protein dnaJ-related...		Lus10021120 [exp]	15.5	0.7356
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Lus10012922 [exp]	16.4	0.7221
AT3G23580		RNR2A	ribonucleotide reductase 2A (....		Lus10004435 [exp]	16.5	0.7557
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10036203 [exp]	20.9	0.7640
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10032531 [exp]	21.6	0.6881

Compare expression of checked genes

Lus10038717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.