Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030128 [exp] 189 / 1e-61 AT1G67623 71 / 2e-14 F-box family protein (.1) Lus10037978 [exp] 187 / 3e-60 AT1G67623 82 / 3e-18 F-box family protein (.1) Lus10038709 [exp] 181 / 8e-58 AT1G67623 90 / 3e-21 F-box family protein (.1) Lus10022147 [exp] 120 / 2e-35 AT1G67623 78 / 5e-18 F-box family protein (.1) Lus10005844 [exp] 108 / 8e-31 AT1G67623 76 / 3e-17 F-box family protein (.1) Lus10023768 [exp] 71 / 2e-16 AT1G74875 66 / 6e-14 unknown protein Lus10006434 [exp] 55 / 2e-09 AT1G67623 61 / 1e-10 F-box family protein (.1) Lus10030790 [exp] 48 / 8e-07 AT1G67623 57 / 4e-09 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008800 [exp] 89 / 3e-22 AT1G74875 110 / 2e-29 unknown protein Potri.001G321400 [exp] 80 / 1e-18 AT1G67623 102 / 6e-26 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038720 pacid=23143029 polypeptide=Lus10038720 locus=Lus10038720.g ID=Lus10038720.BGIv1.0 annot-version=v1.0 ATGGCCCCATCTATCTCTTCCCTCCGCCATCTCCCTAGAGACATCCTCGTCGACGTCCTCGCCAGGGTAGCTGTCACATCCACCGCCTACCTCGTCAGCG CGAAATTGACATGCAAGGCCCTGTTAGACGCTTCTGCAGACAACTACGTATACCGCTATGTTGAGATCTACCAAATCCCCCTCATGCCTTGCCTTTCCAA TTTAATGTCTGCTACCCGGTCGGGTCCCTTGGAATCGATTTATGTTTGCGGCATCATCGCATTATGCCTTGGCCAGGAGGAAGAAGGGATGACTTTTCTT CGGTCTACAGAAGGAGGTGGCTTGCGATGGCCGGAGAAGGTTAAGTATTGTCGTAACAGGGTGAAGTCGGTGCTAGGGGTTATGTGGGTGAGTAATTTCA TGGTTGTAGCGGTGGTGGGGAGGATCAACCTCCCTATATTATTAGCTACACTTCTGAAGATGAAGGGTGGTTGA
AA sequence Show only first row Show all	>Lus10038720 pacid=23143029 polypeptide=Lus10038720 locus=Lus10038720.g ID=Lus10038720.BGIv1.0 annot-version=v1.0 MAPSISSLRHLPRDILVDVLARVAVTSTAYLVSAKLTCKALLDASADNYVYRYVEIYQIPLMPCLSNLMSATRSGPLESIYVCGIIALCLGQEEEGMTFL RSTEGGGLRWPEKVKYCRNRVKSVLGVMWVSNFMVVAVVGRINLPILLATLLKMKGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038720 [exp]	0	1
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023977 [exp]	4.0	0.8990
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014219 [exp]	4.6	0.8130
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023218 [exp]	6.3	0.8861
					Lus10000400 [exp]	7.7	0.8764
AT3G51760			Protein of unknown function (D...		Lus10022661 [exp]	8.7	0.8241
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	8.9	0.8764
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10017828 [exp]	9.5	0.8426
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	10.0	0.8764
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032498 [exp]	10.4	0.7714
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Lus10018290 [exp]	10.8	0.7240

Compare expression of checked genes

Lus10038720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.