Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32810 688 / 0 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) AT3G24220 94 / 5e-20 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT4G19170 94 / 6e-20 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT1G30100 94 / 9e-20 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT3G63520 84 / 1e-16 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT3G14440 77 / 1e-14 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G78390 74 / 1e-13 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT4G18350 65 / 1e-10 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001599 [exp] 930 / 0 AT4G32810 687 / 0.0 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) Lus10035696 [exp] 96 / 4e-20 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10029513 [exp] 87 / 2e-17 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10023673 [exp] 83 / 3e-16 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10026185 [exp] 79 / 3e-15 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10019710 [exp] 79 / 4e-15 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 79 / 6e-15 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10011750 [exp] 62 / 1e-09 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10037286 [exp] 57 / 4e-09 AT4G19170 263 / 9e-86 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238500 [exp] 865 / 0 AT4G32810 761 / 0.0 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) Potri.018G044100 [exp] 857 / 0 AT4G32810 761 / 0.0 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) Potri.018G043500 [exp] 91 / 8e-19 AT3G63520 243 / 7e-73 carotenoid cleavage dioxygenase 1 (.1) Potri.018G043000 [exp] 90 / 2e-18 AT3G63520 236 / 5e-70 carotenoid cleavage dioxygenase 1 (.1) Potri.006G239300 [exp] 87 / 1e-17 AT3G63520 240 / 8e-72 carotenoid cleavage dioxygenase 1 (.1) Potri.011G112400 [exp] 85 / 4e-17 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.001G393800 [exp] 81 / 9e-16 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.003G176300 [exp] 81 / 1e-15 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.019G093400 [exp] 81 / 1e-15 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.011G084100 [exp] 79 / 3e-15 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10038721 pacid=23143101 polypeptide=Lus10038721 locus=Lus10038721.g ID=Lus10038721.BGIv1.0 annot-version=v1.0 ATGGCATCCATGGCGGCGTTCTCTGGGACCACCAAAAGCAACGTTTCTCCTGGCAGCTCCAAAAAGTTTACCCACCTCAGCAACAATAACAACTCACTCT CTGGCAGACTTCCACTTCTAACCACCTCCGTTCTTGTCCGCTCCGGCGCCGCCGGCAGGAAGTCGGTGTTGACAAGTGCTGCCACGGAGGTTCCAGCCTT TGTTCCTTCGCCAGCTGTTGTTGATGATAAGAACCACACGGCGTGGACGAGTGTGCGGCAGGAGCGTTGGGAAGGCGAGCTCGATGTTCAAGGACATATC CCTCTCTGGCTGAGTGGGACGTACCTTAGGAACGGACCAGGTCTATGGCACCTAGGTGATTACAACTTCCGCCACCTCTTCGACGGCTACGCGACACTCG CTAAGCTCCACTTCAAAGACGGCCGCCTGGTGTTCGGACACCGCCAAATCGAGTCCGTTGCATACAAGGCCGCCAAGAAGAACAACAAGCTCTGCTACCG CGAGTTCTCCGAGGCCCCCAAGCCGGACAATTTCTTGTCCTACATCGGTGACATGGCCAGCCTCCTCTCCGGTGCATCCCTCACCGACAACGCAAACACG GGAGTTGTCAAGCTTGGAGATGGTCGTGTGAGTGGGACGTACCTTAGGAACGGACCAGGTCTATGGCACCTAGGTGATTACAACTTCCGCCACCTCTTCG ACGGCTACGCGACACTCGCTAAGCTCCACTTCAAAGACGGCCGCCTGGTGTTCGGACACCGCCAAATCGAGTCCGTTGCATACAAGGCCGCCAAGAAGAA CAACAAGCTCTGCTACCGCGAGTTCTCCGAGGCCCCCAAGCCGGACAATTTCTTGTCCTACATCGGTGACATGGCCAGCCTCCTCTCCGGTGCATCCCTC ACCGACAACGCAAACACGGGAGTTGTCAAGCTTGGAGATGGTCGTGTGGTCTGCCTGACGGAGACCCAGAAGGGGTCCATAGTGGTGGACCCCAATAACC TAGACACGATAGGGAAGTTTGAGTACACGGACTCGCTAGGTGGACTTATCCACTCGGCCCACCCGATCGTGACCGACTCTGAGTTCCTGACCCTGCTGCC CGATTTGATCCGACCGGGTTACTTCGTAGTGAGGATGGAAGCAGGGAGTAACGAACGGAAGGTGATTGGGCGCGTGGATTGTAGGGGTGGTCCGTCTCCT GGGTGGGTCCACTCGTTCCCGGTAACGGAGCATTACGTGGTGGTCCCGGAAATGCCGTTGAGGTACTGCGCTCAGAATTTGCTAAAGGCTGAACCGACGC CGCTTTACAAGTTCGAATGGCATCCTGAGTCCAAGGCCTTTATGCACATCATGTGCAAGGCTAGTGGCAAAATCGTGGCGAGCGTGGAGGTGCCGTTGTT TGTGACATTCCATTTCATAAATGCATACGAGGAGAAGGATGAGGATGGGAGGGTGACGGCGGTGATCGCAGATTGCTGTGAGCATAGCGCTGACACTACT ATTTTGGAGAATCTCAGACTTCAAAATCTACGTTCTTTCATGGGAAAAGATACATTGCCAGATGCCAAGGTGGGGAGGTTTAGGATTCCACTAGATGGGA GTCCAAAAGGGGAATTGGGGGCAGCATTGGATCCAGAAGAGCATGGAAGAGGGATGGATATGTGCAGCATTAACCCAGCATTTTTGGGCAAGAAGTACCG TTATGCTTATGCATGTGGAGCCCAGCGTCCATGCAATTTCCCCAACACCCTCACTAAGGTTGATCTGAAGGAGAAGAAAGCCAAGAATTGGTGTGATGAG GGTACAATTCCGTCGGAGCCATTTTTCGTGGCTAGACCCGGTGCAACAGAGGAAGATGATGGAGTGGTGATATCGATGGTAAGCGAGAAGGAAGGAGGAG GGTATGCTGTGGTGTTGGATGGAACAACATTTGAAGAGATTGCCAGAGCAAGATTCCCATACGGCCTTCCTTACGGCCTTCATGGATGCTGGGTCCCTAC TGTCTAA
AA sequence Show only first row Show all	>Lus10038721 pacid=23143101 polypeptide=Lus10038721 locus=Lus10038721.g ID=Lus10038721.BGIv1.0 annot-version=v1.0 MASMAAFSGTTKSNVSPGSSKKFTHLSNNNNSLSGRLPLLTTSVLVRSGAAGRKSVLTSAATEVPAFVPSPAVVDDKNHTAWTSVRQERWEGELDVQGHI PLWLSGTYLRNGPGLWHLGDYNFRHLFDGYATLAKLHFKDGRLVFGHRQIESVAYKAAKKNNKLCYREFSEAPKPDNFLSYIGDMASLLSGASLTDNANT GVVKLGDGRVSGTYLRNGPGLWHLGDYNFRHLFDGYATLAKLHFKDGRLVFGHRQIESVAYKAAKKNNKLCYREFSEAPKPDNFLSYIGDMASLLSGASL TDNANTGVVKLGDGRVVCLTETQKGSIVVDPNNLDTIGKFEYTDSLGGLIHSAHPIVTDSEFLTLLPDLIRPGYFVVRMEAGSNERKVIGRVDCRGGPSP GWVHSFPVTEHYVVVPEMPLRYCAQNLLKAEPTPLYKFEWHPESKAFMHIMCKASGKIVASVEVPLFVTFHFINAYEEKDEDGRVTAVIADCCEHSADTT ILENLRLQNLRSFMGKDTLPDAKVGRFRIPLDGSPKGELGAALDPEEHGRGMDMCSINPAFLGKKYRYAYACGAQRPCNFPNTLTKVDLKEKKAKNWCDE GTIPSEPFFVARPGATEEDDGVVISMVSEKEGGGYAVVLDGTTFEEIARARFPYGLPYGLHGCWVPTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Lus10038721 [exp]	0	1
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10041247 [exp]	3.5	0.9673
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013932 [exp]	4.5	0.9654
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Lus10001599 [exp]	6.0	0.9539
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10021267 [exp]	7.1	0.9564
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10021955 [exp]	7.1	0.9584
AT5G04010			F-box family protein (.1)		Lus10035421 [exp]	9.8	0.9517
					Lus10007415 [exp]	10.2	0.9578
AT4G34210		ASK11	SKP1-like 11 (.1)		Lus10041874 [exp]	12.5	0.9140
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007243 [exp]	15.8	0.9455
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	16.7	0.9522

Compare expression of checked genes

Lus10038721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.