Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25830 413 / 9e-145 YebC-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011628 [exp] 389 / 5e-136 AT2G25830 321 / 5e-110 YebC-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238400 [exp] 452 / 3e-160 AT2G25830 410 / 4e-144 YebC-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01709 [flax] [poplar] Transcrip_reg Transcriptional regulator
Representative CDS sequence Show only first row Show all	>Lus10038722 pacid=23143163 polypeptide=Lus10038722 locus=Lus10038722.g ID=Lus10038722.BGIv1.0 annot-version=v1.0 ATGCCAAGCCTAGTCCAACAGAACCGGTGGCAGAAAGACACAGCTCCGCCGGTAGCCGCAACTTCACGGGGACTTTGGCAGTACAGAGTCAGCCAGTCCT GTCCTTGGTGTCGCTGCTGCGCAAGGTACGCGATGAGACTGGTGGGTACAGTTCTTCATAGATTCTCAATTGGCTTCTCCTCCAAACTCCCAAGCACCAT CTCCCCTCTTCCTTATCCAAGATGTCATTTTCTGGGCAGGGCAGCGATGTATAGTAGCTCCACATTGTTCTTCGAACAAGAGATACGCCGTGAGAATCAA GTGGGCACAGTGAGAAAGATATGTGCTTTCGCTACTGTTTGTATGGGTCGGCGTTCCAGCAAAATCGCTGGCAGAAAGGGTGCACAAGATGCCAAGAAGG CAAAGCTTTATTCAAGAATAGGAAAAGAAGTCGTATCTGCTGTGAAGAAAGGTGGTCCAAATCCAGTTTCAAATACAGCTCTTGCTGCAGTACTTGACAA AGCCAAGGAGCTTGATGTACCCAAGGAAATTTTGGAGAGGAACATGAAGAGGGCTTCTGAGAAAGGACAGGAGGCTTACATCGAGAAAATTTATGAGGTA TATGGCTATGGAGGAGTTAGCATGGTTGTGGAAGTATCGACAGACAAAGTAAATCGATCTGTGGCAGCTATTAGGGAGGTGGTGAAGGACTATGGGGGAA AAATGGCTGATTCTGGATCTGTTATATTCAAATTTCGACGGGCCCGTGTTGTGAATGTGAAAGTAACAGATGCTGATAAAGACCAGTTGCTTGATATTGC CTTAGATACTGGTGCGGAGGATGTTATTGAACCTTCAATTTATGAGGATGACCCGGATGAAGATAAGGCACAAAGCTGCTATAAAATCGTCAGTGATACG GATAACTATGCAGCCATATTATCGAAGCTCCGTGAAGAAGGTATAGCCTTTGAGACAGATAATGGTTCTGAGCTGCTACCCATAACAACAATAGAGGTGG ATGACGAAGCAGTGGATTTGAACAGAGAGCTTATATCTAAACTACTTGAACTTGATGATGTGGACGCTGTTTACGCGGACCAGAAGTGA
AA sequence Show only first row Show all	>Lus10038722 pacid=23143163 polypeptide=Lus10038722 locus=Lus10038722.g ID=Lus10038722.BGIv1.0 annot-version=v1.0 MPSLVQQNRWQKDTAPPVAATSRGLWQYRVSQSCPWCRCCARYAMRLVGTVLHRFSIGFSSKLPSTISPLPYPRCHFLGRAAMYSSSTLFFEQEIRRENQ VGTVRKICAFATVCMGRRSSKIAGRKGAQDAKKAKLYSRIGKEVVSAVKKGGPNPVSNTALAAVLDKAKELDVPKEILERNMKRASEKGQEAYIEKIYEV YGYGGVSMVVEVSTDKVNRSVAAIREVVKDYGGKMADSGSVIFKFRRARVVNVKVTDADKDQLLDIALDTGAEDVIEPSIYEDDPDEDKAQSCYKIVSDT DNYAAILSKLREEGIAFETDNGSELLPITTIEVDDEAVDLNRELISKLLELDDVDAVYADQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25830			YebC-related (.1)		Lus10038722 [exp]	0	1
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10042452 [exp]	4.0	0.7313
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10005043 [exp]	4.2	0.7506
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10024229 [exp]	6.0	0.7410
AT2G15910			CSL zinc finger domain-contain...		Lus10021009 [exp]	7.3	0.7179
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10024942 [exp]	12.0	0.7294
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10005905 [exp]	13.3	0.7317
AT1G12400			Nucleotide excision repair, TF...		Lus10007001 [exp]	13.4	0.6708
AT3G07525		ATG10, ATATG10	autophagy 10, autophagocytosis...		Lus10008745 [exp]	14.1	0.7080
AT1G07210			Ribosomal protein S18 (.1)		Lus10039100 [exp]	15.5	0.6620
					Lus10042733 [exp]	17.3	0.6593

Compare expression of checked genes

Lus10038722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.