Plant FIBer expression Database

Lus10038723 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32910 870 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011625
[exp]
1291 / 0 AT4G32910 902 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G044300
[exp]
678 / 0 AT4G32910 610 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07575 Nucleopor_Nup85 Nup85 Nucleoporin
Representative CDS sequence
>Lus10038723 pacid=23143003 polypeptide=Lus10038723 locus=Lus10038723.g ID=Lus10038723.BGIv1.0 annot-version=v1.0
ATGCCCGGAATAGCATCGGACCCCGGCGGAGGGGCGCCCGACTCGGTCAACGGAGCATTGGTCCCTTATTTGCCAGATTCCCACGTTTCCGTAGTCTACC
CGCTCCGCCACGGTCTAATCCCTCCCATCTCTCGCGTCTCCCTTTCCTGGGGCCGCGGAAACTCCCTCCGCGTCTCCGTTTTCCAGGAGCCATCTTCGTC
TACCGAAGCCGAGGTTGGAGGGCAAGTGGTGGAGGTGACTCTTGGCAAAAGCAGAGACGGAGAGATCACTGACGCTCAATGGCGGAAGATAGCCTACGGC
TCAGTCTCCCCTTTCGCACTTCTCCAGAGCCGCAAAAATTCCTCTTCGAGCTTCTCCAACATAAAATTGTCTCCCTCTCCTTACCATCTTGAGTGGTGGG
AATATGTAATGGAGTACAGCAAGGACATAAGTTCGCTTCTCGGAAATCCAAAATCACTGGTTGCTCCACTCATCGAAGATCCGAGGGAGGTTGTAAAGAA
TGATGAGGAGCCAACCAGTTTAAAGGCAGCATGGGAGCTGATGGAAATGTTCTATGTGGATAAGTTATCGCAATCATGGTTGCCTGAACGCCTGGTTGAT
TGGTTAGCTGATTATGATAGCCTCTTATCTGTCTCTCTGTCAACTGTTCACTTGAAGCTTGTGGAGTTTCAAGGACAAATTGTCACCTTACAGGTTATTG
AGGATGATCAGAGATATTGGAACTTGGTATCATCAGCACTAGCTGTTGGTTGGTTAGAGATAGTGACAGAGAATGGTCTAGTAGAGGCTGTTGCTGTTCT
TATTTCCAAGATGCCACGTATGCGACCGGTTATGGGTAATGGAAAGCTTGGTGAGTGCTTCAATGCCAAACCTGATTATGTGAAGGCATGGGAAAGATGG
CGTGCACAGATAACTAAATTAGATTGTAGTGCATTCTGGGTTCAGTGTGAACATCATCAGACTCGAGAAGGGTTGAAAAATCTGCTCCAGATCATGCTTG
GAAATGTTGACGTTCTCTGCTCTGCTACATGTCATTGGATAGAGTTATACGTGTCTCACTTCCTCTATATAAGACCTTTCACTGCTGGACTTGAAAGCAT
GTATAGCTTGGCCCATAAATGTATTCAACTGAAACAGGCATCCAATCCCCATAAGTTGATGCGACTTATGATTGGAATTCTTGGAGAGAATAATGAGGTT
GTGTTAGCAGAATGCTCAAGAGGGTTTGGTCCTTGGATGGTAGCCCATGCCATGGAACTTTTGAGTGCCTTGAGCAATGAAGCAGATATGCTTTTACATG
AGGAGCTGGAAAACTTAGGTGGGATCAGTTTGGAGGAGCTCCATCGGCTTGCTTATGCTCAAGTTCTATCTTCTCATGCGTTAACTTGGCAAATAGCTCC
AATTTATTTGGCATCGTGTATGAGGCAGGGCATGGGTTTACTTAAAATTTTATTGCTCAAGCAGTCAGTTCTGGATGATCGACTGTTGCTGAAGAACCTG
GAGATTTGCCGGCTTTATGAACTTGATTTTGTCAGTTCACACCTAATGGAGATTTCAGGAGTGTACCACTGGAAGCATGGCAGGAAAGGAAGTGCTATCT
TTTGGCTTCGGCAAGCCCAGGATGAGGTTCGCCTTAACAGGATTGCTAAGCAGTTGTTTGATTCTGTTGGGAAGTCCATCTCTGGTGAAAGTTTCAAGCA
ATGGGAAGGGCTGATTGAATTGTTGGGTTCAGATGCTAATCCAGCTGGGGGTCTTGATTTCCTGCACAAGTACAGGGATTTCAAGAAATGCCTTGAGCAG
GCTGATACTGGAAAAGATGCAGGTGCTGCTCGTCAAGCAGTGGAATCACTTATGTCGCTTATGAGAAACGCTTCTACGCCACAGCGTTTCTGGTTGCCCA
TTCTATATGATGCGGTAAAGCTACTAAGGTGGGAGGAGAGACCTCTTGTAAATGTAGCACAGACAAACGTGCTGTTGAACAAACTGCAAGAGTTGTCGGT
AGGAAAACTGCGTCCAGATTACATAGTACCAGAGTTGCCTCCTCAGGCATTGAACCATGTTAGATATGCGCTAGCTACTAATCTTGGACGTGCTATAGTT
GACGAATCATGA
AA sequence
>Lus10038723 pacid=23143003 polypeptide=Lus10038723 locus=Lus10038723.g ID=Lus10038723.BGIv1.0 annot-version=v1.0
MPGIASDPGGGAPDSVNGALVPYLPDSHVSVVYPLRHGLIPPISRVSLSWGRGNSLRVSVFQEPSSSTEAEVGGQVVEVTLGKSRDGEITDAQWRKIAYG
SVSPFALLQSRKNSSSSFSNIKLSPSPYHLEWWEYVMEYSKDISSLLGNPKSLVAPLIEDPREVVKNDEEPTSLKAAWELMEMFYVDKLSQSWLPERLVD
WLADYDSLLSVSLSTVHLKLVEFQGQIVTLQVIEDDQRYWNLVSSALAVGWLEIVTENGLVEAVAVLISKMPRMRPVMGNGKLGECFNAKPDYVKAWERW
RAQITKLDCSAFWVQCEHHQTREGLKNLLQIMLGNVDVLCSATCHWIELYVSHFLYIRPFTAGLESMYSLAHKCIQLKQASNPHKLMRLMIGILGENNEV
VLAECSRGFGPWMVAHAMELLSALSNEADMLLHEELENLGGISLEELHRLAYAQVLSSHALTWQIAPIYLASCMRQGMGLLKILLLKQSVLDDRLLLKNL
EICRLYELDFVSSHLMEISGVYHWKHGRKGSAIFWLRQAQDEVRLNRIAKQLFDSVGKSISGESFKQWEGLIELLGSDANPAGGLDFLHKYRDFKKCLEQ
ADTGKDAGAARQAVESLMSLMRNASTPQRFWLPILYDAVKLLRWEERPLVNVAQTNVLLNKLQELSVGKLRPDYIVPELPPQALNHVRYALATNLGRAIV
DES

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G32910 unknown protein Lus10038723
[exp]
0 1
AT2G34357 ARM repeat superfamily protein... Lus10021944
[exp]
2.2 0.9457
AT1G33390 ATFAS4 FASCIATED STEM 4, RNA helicase... Lus10025616
[exp]
3.9 0.9261
AT4G07410 PCN POPCORN, Transducin family pro... Lus10005385
[exp]
4.2 0.9304
AT4G28200 unknown protein Lus10004616
[exp]
4.5 0.9279
AT5G58450 Tetratricopeptide repeat (TPR)... Lus10026402
[exp]
4.9 0.9289
AT1G17690 NOF1 nucleolar factor 1, unknown pr... Lus10014835
[exp]
8.8 0.8994
AT2G34357 ARM repeat superfamily protein... Lus10041231
[exp]
8.8 0.9036
AT2G28600 P-loop containing nucleoside t... Lus10034162
[exp]
10.5 0.9036
AT4G13650 Pentatricopeptide repeat (PPR)... Lus10018978
[exp]
11.0 0.8933
AT5G64390 HEN4 HUA ENHANCER 4, RNA-binding KH... Lus10007236
[exp]
12.0 0.8971

Lus10038723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.