Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11580 591 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 124 / 2e-30 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G16040 108 / 2e-25 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 107 / 6e-25 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G19420 100 / 8e-22 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 100 / 1e-21 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 94 / 8e-20 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G08710 89 / 8e-19 RUG1 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) AT3G55580 89 / 1e-18 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G42140 90 / 2e-18 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024239 [exp] 260 / 8e-83 AT1G26930 147 / 3e-41 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10012474 [exp] 216 / 2e-67 AT1G27060 89 / 2e-21 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10008730 [exp] 210 / 1e-64 AT1G27060 132 / 1e-36 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10039618 [exp] 119 / 1e-28 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10033543 [exp] 104 / 7e-24 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10029536 [exp] 98 / 2e-21 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10017581 [exp] 95 / 1e-20 AT3G02510 636 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10026455 [exp] 87 / 3e-20 AT3G51770 63 / 2e-12 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10002751 [exp] 94 / 1e-19 AT5G19420 949 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G044400 [exp] 718 / 0 AT5G11580 578 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.007G100200 [exp] 120 / 2e-29 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 98 / 7e-22 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G101800 [exp] 97 / 1e-21 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G099900 [exp] 91 / 2e-19 AT3G02300 711 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.009G071800 [exp] 89 / 3e-18 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.008G167500 [exp] 89 / 3e-18 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.001G276900 [exp] 86 / 4e-17 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.004G080900 [exp] 85 / 7e-17 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.001G026900 [exp] 84 / 1e-16 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10038724 pacid=23143089 polypeptide=Lus10038724 locus=Lus10038724.g ID=Lus10038724.BGIv1.0 annot-version=v1.0 ATGGTAGACACCGGTCCACAGATGCCCGACTTGCCCCGTAAAGTCGCTTCCATCGCTGCTGGTGAAGCTCATACTCTCGCCCTCACCGGAGATGGCTGCG TTTATTCATGGGGAAGAGGAATGTTTGGGCGACTAGGTACTGGTTCTGAGCAAGATGAACTCTCCCCTATTCCAGTCAATTTCGATAAATCTCCAAACAA GCTTGTGGGAATTGCTGCTGGTGCTTATCACAGTCTTGCTCTTTCAGATGATGGATCAGTTTGGTGTTGGGGTTACAATGTCTATGGCCAAATTGGCGTG AATGGAGAGAACCCTGTGGTTCCACAGTTGTTGGAACAATTCATTGATTTGTCATCTCCTGATGTGGAGACAAAGAGCAAAACACCATTAAGGATTTGTT CCATTAAAGCTGGTGGAATGATGTCTTTGGCTATTGACAATGTTGGAGGCTTGTGGATATGGGGAAATTGTCCACAACAAAGCAGCAGCAGTGAAGGTGG TTTCTCTGTTGTTAGCAATTTTGCCCCGGTTCCTGTGCGGGATCTTCACGGGCACACTGTTGTCAAAGTTGCTTGCGGAAATGAACACGTGGTAGCCCTT GTAAGTGCTGGAGAAACGCACAAGGGCAGAGGAGATCTTGTTTGCTATTCTTGGGGTAATAATAATCACGGGCAGTTAGGGCTTGGAGATAAAAAGAGCC GTGTCGGTCCAGAAGTTGTTCAAGCATTTAACCAGGAGGCATCTTGGGATGTATATGAGGTATCCTGCGGGGCATTCCACACTGCTTTGCTATCCCTTAA AAAGAGACCAACAAGTGATAAATTAGAAAGTGTTTGCTGGACATTTGGCCTTGGAGATAATGGGCAACTAGGACATGGAACCACTCAAAGTGTGTCATCT CCTGAACCTGTGAAAGAGTTGCCGCAGCAAGTATACCTTGTATCTATTGATTGTGGCTTGTTTCATACTAGTGTGGTTTCATCGAGTGGATATGTGTGGT CTTGGGGAATGGAAAAGGGGCTTGGACTATGCCCAGATGCTACTTTTTCAGAAACAGATGCAGGAGATGCTTCCTTACCCTTGTTAATTTCAGACAACAG GCGTACGTTTCACGATCCAGTCCAAGTAGCCTGTGGTGCAGCACATACCGTTCTTGTTACGGATGGTGGATACAGGCTTTGGTCTTGGGGTAGGGGAAGG AGTGGTGTTCTTGGAAATGGAAAGACTATTGATTTTTACACCCCTAGTCATGTGTTATGGCCTCCACTAGGTGAGGATTCCAAGGAACAACAGCTCGGTG ATGTTAATGAAAAGGATGAAGTTGGAGACGAGGGTTCTGATGTTGACAAAAGACTATCCGCTGCAATGGAGGAGATGAAGCTTCTCCGATCCAAATATTC ATCGATGGAGCAACACGCTAGCATGCTTCATGGTCTTATTTTTGGTGAACCTTTAAGGGAACATGAAATTACTAGCTCCTGGCAGCAGTCAAGTGGTGTT GATATCACAAGACAATGGGAAGACATGTTAGAATCAGTAGATCGCAGTAAGCTGATGAGGTTGGAAAGGTTCTACGAAGGAATGGTTGCATGTGTGAAGG ATAAACTATTGAAGAGGAGGATCCAGGAGATAGTAAGGGAATGCATGCCTCCTTCAAATTAG
AA sequence Show only first row Show all	>Lus10038724 pacid=23143089 polypeptide=Lus10038724 locus=Lus10038724.g ID=Lus10038724.BGIv1.0 annot-version=v1.0 MVDTGPQMPDLPRKVASIAAGEAHTLALTGDGCVYSWGRGMFGRLGTGSEQDELSPIPVNFDKSPNKLVGIAAGAYHSLALSDDGSVWCWGYNVYGQIGV NGENPVVPQLLEQFIDLSSPDVETKSKTPLRICSIKAGGMMSLAIDNVGGLWIWGNCPQQSSSSEGGFSVVSNFAPVPVRDLHGHTVVKVACGNEHVVAL VSAGETHKGRGDLVCYSWGNNNHGQLGLGDKKSRVGPEVVQAFNQEASWDVYEVSCGAFHTALLSLKKRPTSDKLESVCWTFGLGDNGQLGHGTTQSVSS PEPVKELPQQVYLVSIDCGLFHTSVVSSSGYVWSWGMEKGLGLCPDATFSETDAGDASLPLLISDNRRTFHDPVQVACGAAHTVLVTDGGYRLWSWGRGR SGVLGNGKTIDFYTPSHVLWPPLGEDSKEQQLGDVNEKDEVGDEGSDVDKRLSAAMEEMKLLRSKYSSMEQHASMLHGLIFGEPLREHEITSSWQQSSGV DITRQWEDMLESVDRSKLMRLERFYEGMVACVKDKLLKRRIQEIVRECMPPSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	0	1
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036570 [exp]	1.0	0.9561
AT3G25480			Rhodanese/Cell cycle control p...		Lus10005853 [exp]	2.0	0.9387
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10007194 [exp]	2.2	0.9233
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10027278 [exp]	2.4	0.9320
AT1G56180			unknown protein		Lus10006532 [exp]	4.9	0.9261
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10035045 [exp]	6.9	0.9166
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10041265 [exp]	9.2	0.9144
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	9.8	0.8708
AT1G01080			RNA-binding (RRM/RBD/RNP motif...		Lus10002676 [exp]	9.9	0.8961
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10040554 [exp]	10.1	0.8838

Compare expression of checked genes

Lus10038724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.