Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01980 166 / 1e-47 ATSOS1, SOS1, ATNHX7 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) AT1G14660 159 / 2e-45 ATNHX8 SODIUM HYDROGEN EXCHANGER 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8 (.1), Na+/H+ exchanger 8 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039133 [exp] 214 / 3e-64 AT2G01980 1319 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G100900 [exp] 180 / 2e-52 AT2G01980 1363 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Potri.008G140700 [exp] 154 / 2e-43 AT2G01980 1345 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10038725 pacid=23150512 polypeptide=Lus10038725 locus=Lus10038725.g ID=Lus10038725.BGIv1.0 annot-version=v1.0 ATGGCAAGTAGTATCAGTAGTAGTAGCATTATCATGGACCTTGACCATGTTGGCTTCACAGTTTTTGTAGAGGAGGCCTCCCCGGAATCCTCCTCCTCTT CACTTGCTTCAAATCCAACAGACGCCGTCATCTTCTTCGGCTTGTCTCTAGTGCTCGGGATCGCCAGCCGGCACGTCTTGCGCGGCACTCGGGTTCCGTA CACCGTCGCTCTACTCATCATCGGCATTGTCCTCGGATCCTTAGGGGCGAGTATTGATCCTGACCTTCTGTTGGCTGTTTTCCTTCCTGCTCTGCTGTTT GAGAGTTCCTTCTCTATGGAGCTTCATCAAATTAAGAGATGTATGGCACAAATGCTTCTACTTGCTGGTCCAGGAGTTTTGCTCTCGACATTTTTCCTTG GATCAGCGTTGAAGCTAATCTTTCCCTATTCATGGACCTGGAAAACATCATTGTTACTTGGGGGGCTGTTAAGTGCCACTGACCCTGTTGCTGTTGTTGC TCTTTTGAAAGAGCTAGGTGCAAGCAAAAAACTTAGTACGATTATTGAGGGAGAATCCTTAATGAATGATGGGTAA
AA sequence Show only first row Show all	>Lus10038725 pacid=23150512 polypeptide=Lus10038725 locus=Lus10038725.g ID=Lus10038725.BGIv1.0 annot-version=v1.0 MASSISSSSIIMDLDHVGFTVFVEEASPESSSSSLASNPTDAVIFFGLSLVLGIASRHVLRGTRVPYTVALLIIGIVLGSLGASIDPDLLLAVFLPALLF ESSFSMELHQIKRCMAQMLLLAGPGVLLSTFFLGSALKLIFPYSWTWKTSLLLGGLLSATDPVAVVALLKELGASKKLSTIIEGESLMNDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10038725 [exp]	0	1
AT1G79570			Protein kinase superfamily pro...		Lus10031750 [exp]	10.0	0.8746
AT3G62900			CW-type Zinc Finger (.1)		Lus10009815 [exp]	10.6	0.8739
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Lus10040537 [exp]	20.0	0.8424
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011135 [exp]	20.7	0.8729
AT5G56250		HAP8	hapless 8 (.1.2)		Lus10027098 [exp]	22.0	0.8489
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028693 [exp]	22.8	0.8046
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10011393 [exp]	22.8	0.8497
AT3G17920			Outer arm dynein light chain 1...		Lus10041989 [exp]	23.0	0.8042
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10008630 [exp]	27.5	0.8619
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009712 [exp]	29.0	0.8648

Compare expression of checked genes

Lus10038725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.