Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79610 637 / 0 ATNHX6 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) AT1G54370 518 / 1e-179 NHX5, ATNHX5 NA+/H+ ANTIPORTER 5, sodium hydrogen exchanger 5 (.1) AT3G05030 141 / 1e-35 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.1.2) AT5G55470 136 / 6e-34 ATNHX3 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) AT5G27150 132 / 1e-32 AT-NHX1, ATNHX1, NHX1 Na+/H+ exchanger 1, Na+/H+ exchanger 1 (.1) AT3G06370 130 / 4e-32 ATNHX4, NHX4 sodium hydrogen exchanger 4 (.1) AT2G01980 76 / 5e-14 ATSOS1, SOS1, ATNHX7 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) AT1G14660 63 / 4e-10 ATNHX8 SODIUM HYDROGEN EXCHANGER 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8 (.1), Na+/H+ exchanger 8 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039131 [exp] 664 / 0 AT1G79610 677 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) Lus10040903 [exp] 139 / 7e-35 AT3G05030 769 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10012801 [exp] 138 / 2e-34 AT3G05030 790 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10033840 [exp] 137 / 5e-34 AT3G05030 854 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10004141 [exp] 136 / 8e-34 AT3G05030 846 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10005934 [exp] 137 / 1e-33 AT3G05030 768 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10016583 [exp] 135 / 1e-33 AT5G55470 764 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10001718 [exp] 135 / 5e-33 AT3G05030 748 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10018989 [exp] 131 / 2e-31 AT3G05030 750 / 0.0 sodium hydrogen exchanger 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G000200 [exp] 555 / 0 AT1G79610 724 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) Potri.014G134900 [exp] 140 / 2e-35 AT3G05030 707 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.005G045100 [exp] 138 / 1e-34 AT3G05030 840 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G026600 [exp] 138 / 1e-34 AT3G05030 548 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.010G031500 [exp] 138 / 2e-34 AT3G05030 792 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G031700 [exp] 134 / 3e-33 AT3G05030 834 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.010G100900 [exp] 70 / 3e-12 AT2G01980 1363 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Potri.008G140700 [exp] 65 / 1e-10 AT2G01980 1345 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10038727 pacid=23150414 polypeptide=Lus10038727 locus=Lus10038727.g ID=Lus10038727.BGIv1.0 annot-version=v1.0 ATGGCCACGTCTACTGCCTCTTCGATGTTGGCGATGACGACCGGTCATAACTCCGGCGATGGCGGAGGAGCAGGTCAAATATCTCCGACTAGTTTATTTA ATTCATCTTCTTCTCCGCCGTCGTTGCACCCGGGGAAGGAGCAACAAGCAGCTGGAGTCGGCATCCTCCTTCAGATCATGATGCTAGTCCTCTCCTTTGT CCTCGGGCACGTCCTCCGCCGTCACAAATTCTACTATCTACCTGAAGCCAGCGCTTCTCTTCTCATCGGTTTAATCGTCGGCGTGCTTGCTAACATCTCT GATACTGAAACTAGCATCAGGAATTGGTTCAACTTCCATGAAGAATTTTTCTTCCTCTTTCTGCTGCCTCCTATCATCTTATATCCGAAATTGCGTTTAC TTCTCTCAGTATTTTGTTGTTACTATCTATTTGTTGTCCATGTTGTTTATCTTCTCCCTCTTTTTCCTGTGACGATTGTACTTTTGGTTCTCCTTGACTT TTCTTTGTGCTTCACTCAGTCTGGTTTCAGTCTGCAACCAAAACCGTTCTTCTCTAATTTTGGAGCCATTGTAACATTCGCCATCCTTGGAACCTTTATA TCTTCAATTGTTACAGGCATTCTAGTTTACACTGGCGGTCTAATGTTCCTCATGTACAAGCTTCCGTTAGTTGAGTGCCTGATGTTTGGTGCCCTTATAT CAGCCACAGACCCTGTCACTGTCCTGTCCATATTTCAGGAACTTGGAACAGATGTGAACCTGTATGCACTAGTGTTTGGGGAATCTGTTCTCAATGATGC GATGGCAATATCCTTGTACAGGACTATGTCCTTAGTGAGAAGTCATGAGTCATCAGGGAATTTCGTCATGGTGGTTGTCCGGTTTCTTGAAACCTTTGTT GGATCAATGTCTGCAGGCGTGGGGGCCCCTGAATATCGTTTGCATTGTTTGTCTTCTTTTTTCAGTCTTCAGAATCTGGAGTGCTGCCTTTTTGTTCTCT TTCCTTACTTCTCGTACATGCTTGCTGAAGGTCTTGGTCTCTCTGGAATTGTGTCAATATTATTCACAGGAATAGTCATGAAGCATTATACTTTCTCAAA TCTATCAGAAAGTTCTCAACGCTTCGTATCTGCGTTTTTCCATCTGATATCATCACTGGCTGAGACATTTGTGTTTATATACATGGGCTTTGATATTGCA ATGGAACAACATAGCTGGTCACATGTTGGATTTATCTTTTTCTCAATTGTATCCTTCTATATTTTTATGGAAAACCCGGCAGCTAATGTCTTTTCTTGTG CATATTTGGTCAATTTATCTCGACCTGCCAATCGTCACATACCGATAAAGCATCAGAAAGCACTCTGGTATAGTGGTCTTCGAGGGGCTATGGCCTTTGC ACTGGCGCTGCAATCTCTTCATGAATTACCGGAAGGACATGGTCAGACTATATTTACTGCCACAACTGCTATAGTTGTCCTGACGGTGCTACTAATCGGA GGTTCAACAGGTACAATGCTAGAAGCTTTGCATGTCGTTGGGGAGGGACATGAGAGCCCCTTGGCCTTGACTGAAACTTTCGACACTTTCGATGGGAATC ACCGATACATTGCTCCTCCCTATGATGGCGACGACGATGTAACATCGGGGAATAGGTTGAAGCTGAAACTGAATGAACTCCGCAGGAGCACTCCGTCGTT CACGTCACTGGACAAGAACTATCTAACCCCGTTTTTCACTACACAAAATGGAGATGGAGATGGCATTGATGGTAAGGTTCTGTTCTATTTTATCTTCTTC TTAGGGAAATGGCATCTGATGCCTGCACAGAGATGCCATTTTAGCATCTTTTAA
AA sequence Show only first row Show all	>Lus10038727 pacid=23150414 polypeptide=Lus10038727 locus=Lus10038727.g ID=Lus10038727.BGIv1.0 annot-version=v1.0 MATSTASSMLAMTTGHNSGDGGGAGQISPTSLFNSSSSPPSLHPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGVLANIS DTETSIRNWFNFHEEFFFLFLLPPIILYPKLRLLLSVFCCYYLFVVHVVYLLPLFPVTIVLLVLLDFSLCFTQSGFSLQPKPFFSNFGAIVTFAILGTFI SSIVTGILVYTGGLMFLMYKLPLVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVRSHESSGNFVMVVVRFLETFV GSMSAGVGAPEYRLHCLSSFFSLQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKHYTFSNLSESSQRFVSAFFHLISSLAETFVFIYMGFDIA MEQHSWSHVGFIFFSIVSFYIFMENPAANVFSCAYLVNLSRPANRHIPIKHQKALWYSGLRGAMAFALALQSLHELPEGHGQTIFTATTAIVVLTVLLIG GSTGTMLEALHVVGEGHESPLALTETFDTFDGNHRYIAPPYDGDDDVTSGNRLKLKLNELRRSTPSFTSLDKNYLTPFFTTQNGDGDGIDGKVLFYFIFF LGKWHLMPAQRCHFSIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10038727 [exp]	0	1
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10012844 [exp]	4.7	0.8229
					Lus10009341 [exp]	6.0	0.8245
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10024034 [exp]	8.4	0.7901
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10038048 [exp]	11.0	0.8572
AT2G34750			RNA polymerase I specific tran...		Lus10005693 [exp]	14.0	0.8482
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10019855 [exp]	14.1	0.8293
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Lus10041298 [exp]	14.4	0.8507
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	17.7	0.7967
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10004970 [exp]	18.4	0.8088
AT5G45300	BZR	BAM8, BMY2	BETA-AMYLASE 8, beta-amylase 2...		Lus10035679 [exp]	18.7	0.7629

Compare expression of checked genes

Lus10038727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.