Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33410 1333 / 0 NUP160, SAR1, ATNUP160 ARABIDOPSIS NUCLEOPORIN 160, SUPPRESSOR OF AUXIN RESISTANCE1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039130 [exp] 2812 / 0 AT1G33410 1357 / 0.0 ARABIDOPSIS NUCLEOPORIN 160, SUPPRESSOR OF AUXIN RESISTANCE1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G078600 [exp] 1755 / 0 AT1G33410 1511 / 0.0 ARABIDOPSIS NUCLEOPORIN 160, SUPPRESSOR OF AUXIN RESISTANCE1 (.1.2) Potri.003G151850 [exp] 41 / 0.0003 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF11715 [flax] [poplar] Nup160 Nucleoporin Nup120/160
Representative CDS sequence Show only first row Show all	>Lus10038728 pacid=23150376 polypeptide=Lus10038728 locus=Lus10038728.g ID=Lus10038728.BGIv1.0 annot-version=v1.0 ATGGGCAGCAGGTCGACTCTGGTTGGTGTTGAAGTCCCAATCATTGGCAGCGATTCCGTCAAATGGCTCGACCTCTCTGTTCCTCCCTCCGCCGCCGGCA ATGCTGCACCGCCGCAGTTCCCTCCTCTCACCGACGACTGCGCCTCCTGCTGTACCGTTGGAGATCCTCCTCTCTATTTCATCTGGAGGATACATAAGTC TCACCCGAACATTCTGGAGTTGCTTCAGCTCTCTGTGCAGTCAGAGTTTCCAAAGATTGGACTGCGCATTGCTTTCCCTGATGCCCTTGCTCCTTTTGCT CATATCCAACAGAACCAGGATGGTTCCAGACTTCACAATCCATACTCATTATATGTATTGGCCGTCTCCGGAGTTGCTTACCTTATCAAACTTAGAGCTG TTACTGCTTACTCTACGCTATCTGTTTTCCCGAGGGATGAGCTTTTTGAGTTCGATTTAAGTAGCTATTCCGTCAATGCACCGATAACAAGTGTAGCAGC TAGTTCTGGTTGTGTTGTAGTTGGGCGTGGTGATGGTTCTGTTGCCTGTTTTCGGCTTAGCTTACTCGATCACATGGTTCCAGGATTTGTGAATGAGTTG TGCGATGATTCGGGAATTAGTCGTCTATGGGGTTTCATGTCAAGGGGTAGGGCTGTAGGACCTGTGGTGGATTTGGTGGTCAGGGAATTGGATGGACTAC CATTTTTATGTGTGCTTCATTCTAATGGGATGTTGCAAATATGGGATTTATCAAGTCATAGCAAGGTTTTCAGTCAAGGCATGAATGTTCTGACTTCTGA AGGCAATTCTTCATTGTTCTTTGGTACAACATCTGTACGGTTGTGGGTGAGTGAAACTAGCGCCGAGTCCGGGATGATTCCCTTGGCCATCTTGCACAGA CAGTCTCTGGAAAGTAGCATGGAGATGATATGTGTCTACAGCCTGCACTATGCTTTGGCAGATCGATTGAGTCTTTCTGTGGGATCTTCAATACTAAGTA TCCCTTTAGAGGAAGGGCATTGCGTTGATGTAAAGCTGTCATCGGACAAGATATGGATTTTAAAAGACAGTGGCTTGGCGTTTCATAACATATTTGATAC AAATTTTGACGTGAAAGAATCCCACTGCTATGCTTTGCAAGAAGAATTTGTCGCCGAGCAGCTATTCCAAAGTGCTGATCTTTCTTCAGATGATCTCCTT TGGATTATTCATTCAATCTTTTCTTCTGCAAAGGAACAGATTGTGCCATTTATGTCCTCTATATTCTTGCGAAGGCTGCTGCTCCCCGGGGTTTATCACA GTAATGTCCTGCGTTCAACTCTGCTAGATTACAACAAGCAGTGGACTGAGACTGAATTCCAGTCCCTAACTGCTGATGGACTGAAAAAGGAAATTCGTTC ACTTGTAGATGATGAGGGTCTTGGTCGAACTCCAACATCTACTTATTACATCTGGAAGAATTTCTTTGGGTGTTATTTCAGTAACTGGTGCAAGAACAAT TCACCATGCGGTTTGCTTGTTCAGCCTGTCACTGGTGGAATTGGCTTAGTCAGGAAGGATTCTGTGTCTTTATTTCGCAATATGGCAGACATTGAAGTCA TGGCTGAGGGTTGTCTTCAGGAATTTGTTGGTCTCTTGAAGCCTGGATTGGAATTGTCAGGTGATGATGAGCATGAAATTCTCTTGGAAGTACTCAAATG TGTTACTAGTATGAGCCAGCCACTTGGGAAAACTGCCTCTGCTGTTCTCTACGAGGCACTTGTTAGCAAATCAAATATATCATTGGAGGATTTTGTTTCT CAGCTACTGAAAATCTTGCAAACTGGGTGTACACCTTTCTCATTATTTCGCAACTCAGATCTTACTGCTGATTTTGATTTGGGAAAGGAAGCTGATCACA GGAATCTCAGAAAATTCTCCGCAGAGATGATTTTATCTGTTCAGACCTTGTTTAGAAAAGCTACCTCTTGGGGAAAAGTTTTGAATGCCGTGGAGAGCTA TATCCAATCTCTTGTACCCCAGAAGATCCTACAGAACTTAGACACAGAAGTGTCCTTCAATGTAGCCACGTCTGCCCTGGCGCAAGCTATTTCTCAAGTT GCACAGGCGATGTTTGAGTCAGCATTGGACATTCTCCTGTTTGTCAACTATCTCCTCAACATTAGTGGAAAGATTAACATGTTGCATTCTGATGTATCTA GGATGCAACTTGAATTAGTCCCAATGATTCAGGAGACGCTTTATGAGTGGTTGATAGTTTATTTCTTAGTCACAACCTCTTCCGAGCCTCCCGGGATTGA AGATTTTAGCTGTCAACTTTCATCATTGCGTATTGATAGCAAGAATGGTGGAAAATCATGGAGCGACAAATTTGGAAAATGCGGTTTTACGTTGGCTTTT GTTCTTCTGATGTCATATCAAAATTCATCTCAAAGCCTGGGCCGTTATTCCTCACATACTATTCCTAATCCCACACAAATCATTACTGCAGTACAAGATG TTACTAGCTGGATAATTTGGGGTAATAGTAGGGTCGAATCAAATTCGTCAACAAGGCATTATGCTGAGCTTGGATTGACCCTTCTCAGGCATGGCCAGTA CTATGCTGCTGAGTGTTTGTTGAGCATTGTAGAGGCCAATATGCAACGGGAGAAGATATTTAGAAGTCTTCAAGAAAATGATGGTGATTGGTGTGTACTT CAACACCTTTTGGGCTGTTGTCTCCTTGCACAGGCACGGTTTGGGTTCCCTGGTATGCTGAAAGATAGGAAAATTTGTGAAGCTATTCGTTGTTTCTTCA GAGCTTCTTCTGGAGAACAAGCATCAAAATCTTTGCAAGATTTGTCTCATGATACAGGATTGCCACCTCTTTGCTTAGATGCCCCCGTTTCATCTGCTGC ATGGAAGCTACATTACTACCAATGGGCCATGCAAATATTTGAGCAGTATAACTTTAATGAAGGTGCTTACCAGTTTGCTCTTGCTGCACTTGAGCAAGTT GATGAGGCTACAAGTCCGAGAGATGGATCTGATATGGAGCACCCACTTGACGAATCATCAGTTAGTGTCAAGGGACGATTGTGGGCTAATGTTTTCAAGT TCACTTTAGACCTGAATCGCTTCTATGATGCATACTGTGCAATAATTTCAAATCCAGATGAAGAAAGCAAACAGATCTGCCTCCGGCGTTTTATCATAGT ACTTTATGAGCGTGGAGCAATGAAGGTTCTATGTGATGGGAAATTGCCGTTTACAGGTTTAGTTGAGAAGATAGAGAGCGAGCTTGCCTGGAAGGCAGAG CGTGCAGATATAATGGCAAAGCCTAACCTTTATAAGTTGCTCTATGCATTTGAAATGCATAGACATAACTGGCGGAAGGCAGCAGGTTATATATACGAGT ATTCATTCCGATTAAAGACAGAAGTGTTGGTTAAAGATCAAAAGCACTCGTCACTGTTTCTGCAAGAGAGGCTGAATGGTATCTCTGCTGCAATTAACGC ATTGCATCTTGTACACCCAGCATATGCTTGGATTGATCCCCGGTCCGAGAAAACGTCGCATTTTCTTGAAGGTTATCCACATAAAAAGGCCAGAAAGACT GAAAATGAACAATTAGCTCATGGTCAGTCTCAGAAAGCGCAAGAACAATCCTATATCGATCTTGATAAACTTGAGGATGAGTTTGTGCTGACTTCAGCTG AATACACACTGTCACTAGCAAATATTGAATGGAGTTACACAGGAAAAGAAGCACCGTCAGTTTTGGTCAATACATTGGTCCAGGCCAACCTGTATGATAT GGCATTTACAGTTATTTTGAAATTCTGGAAGGGATCAGGGCTGAGGAGGGAACTAGAAAGAGCCTTCTCTGCTATGTCATTGAAATGCTTTCCAAGTAAA TTCAGCTCCACCTCTACAGAGCTGAACCAACTTCTTTTGACATCCTCTGAAGAAAACAATCAATGCTCACCTGGAATGGGGTCCATGTATCAGCAACCTA AGGGGAATTCTCACTGGGAAACTCTCGAGTTTTATCTTGAGAAGTATAAAACCTTCCATGCTGGATTGCCAGTGACTGTTGCTGAGACTTTGCTCCGAAC CGATTCCCTTATTGAGTTGCCTCTTTGGCTTGTACAAATGTTCAAGGATGGTCGCCGGGACAGGACATTAGGAATGACTGGACAAGAATCAAACGCTGCT TCCTTGCTCCGACTTTATGTAAATTGTGGTCGGCATATGGAAGCTGTAAATCTCCTGATCGAGTATATAGATTCATTTGCCACAGCGAGATCATCAAATC TAGTGAAATGTAAAAGGCCACTATCTTCATGGTTCCCATATTCGACGGTAGAGCTGCTGTGGTGCCAACTTGAGGATTCAATTAGAGCTGGTCATCTGGT CGATCAATGCGAGAAGCTAAAAACTCTGTTACATGGAGCTTTACACAAGCATCTGAAGCTTGTAAGCCAAACTTTGCCAGTAGTTATATATTTGTGTACG TTCCTCTCTTTATTACTAAAAAATCTGACGTCCATTGGTGTATCAGATGAAGGTGGATTCTGA
AA sequence Show only first row Show all	>Lus10038728 pacid=23150376 polypeptide=Lus10038728 locus=Lus10038728.g ID=Lus10038728.BGIv1.0 annot-version=v1.0 MGSRSTLVGVEVPIIGSDSVKWLDLSVPPSAAGNAAPPQFPPLTDDCASCCTVGDPPLYFIWRIHKSHPNILELLQLSVQSEFPKIGLRIAFPDALAPFA HIQQNQDGSRLHNPYSLYVLAVSGVAYLIKLRAVTAYSTLSVFPRDELFEFDLSSYSVNAPITSVAASSGCVVVGRGDGSVACFRLSLLDHMVPGFVNEL CDDSGISRLWGFMSRGRAVGPVVDLVVRELDGLPFLCVLHSNGMLQIWDLSSHSKVFSQGMNVLTSEGNSSLFFGTTSVRLWVSETSAESGMIPLAILHR QSLESSMEMICVYSLHYALADRLSLSVGSSILSIPLEEGHCVDVKLSSDKIWILKDSGLAFHNIFDTNFDVKESHCYALQEEFVAEQLFQSADLSSDDLL WIIHSIFSSAKEQIVPFMSSIFLRRLLLPGVYHSNVLRSTLLDYNKQWTETEFQSLTADGLKKEIRSLVDDEGLGRTPTSTYYIWKNFFGCYFSNWCKNN SPCGLLVQPVTGGIGLVRKDSVSLFRNMADIEVMAEGCLQEFVGLLKPGLELSGDDEHEILLEVLKCVTSMSQPLGKTASAVLYEALVSKSNISLEDFVS QLLKILQTGCTPFSLFRNSDLTADFDLGKEADHRNLRKFSAEMILSVQTLFRKATSWGKVLNAVESYIQSLVPQKILQNLDTEVSFNVATSALAQAISQV AQAMFESALDILLFVNYLLNISGKINMLHSDVSRMQLELVPMIQETLYEWLIVYFLVTTSSEPPGIEDFSCQLSSLRIDSKNGGKSWSDKFGKCGFTLAF VLLMSYQNSSQSLGRYSSHTIPNPTQIITAVQDVTSWIIWGNSRVESNSSTRHYAELGLTLLRHGQYYAAECLLSIVEANMQREKIFRSLQENDGDWCVL QHLLGCCLLAQARFGFPGMLKDRKICEAIRCFFRASSGEQASKSLQDLSHDTGLPPLCLDAPVSSAAWKLHYYQWAMQIFEQYNFNEGAYQFALAALEQV DEATSPRDGSDMEHPLDESSVSVKGRLWANVFKFTLDLNRFYDAYCAIISNPDEESKQICLRRFIIVLYERGAMKVLCDGKLPFTGLVEKIESELAWKAE RADIMAKPNLYKLLYAFEMHRHNWRKAAGYIYEYSFRLKTEVLVKDQKHSSLFLQERLNGISAAINALHLVHPAYAWIDPRSEKTSHFLEGYPHKKARKT ENEQLAHGQSQKAQEQSYIDLDKLEDEFVLTSAEYTLSLANIEWSYTGKEAPSVLVNTLVQANLYDMAFTVILKFWKGSGLRRELERAFSAMSLKCFPSK FSSTSTELNQLLLTSSEENNQCSPGMGSMYQQPKGNSHWETLEFYLEKYKTFHAGLPVTVAETLLRTDSLIELPLWLVQMFKDGRRDRTLGMTGQESNAA SLLRLYVNCGRHMEAVNLLIEYIDSFATARSSNLVKCKRPLSSWFPYSTVELLWCQLEDSIRAGHLVDQCEKLKTLLHGALHKHLKLVSQTLPVVIYLCT FLSLLLKNLTSIGVSDEGGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	0	1
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10015971 [exp]	1.4	0.9431
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10028975 [exp]	1.4	0.9628
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10025508 [exp]	3.0	0.9426
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000317 [exp]	4.0	0.9313
AT5G47690			binding (.1.2.3)		Lus10039082 [exp]	4.5	0.9341
AT1G79950			RAD3-like DNA-binding helicase...		Lus10011460 [exp]	4.5	0.9184
AT5G11240			transducin family protein / WD...		Lus10020907 [exp]	5.1	0.9250
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10026725 [exp]	5.7	0.9224
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10021705 [exp]	5.9	0.9330
AT4G30990			ARM repeat superfamily protein...		Lus10042447 [exp]	7.3	0.9297

Compare expression of checked genes

Lus10038728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.