Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44200 218 / 2e-65 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (.1) AT2G44195 125 / 3e-34 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039128 [exp] 577 / 0 AT2G44200 366 / 1e-122 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G000200 [exp] 328 / 4e-108 AT2G44200 221 / 2e-66 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (.1) Potri.016G000501 [exp] 43 / 1e-05 AT2G44200 53 / 1e-09 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12542 [flax] [poplar] CWC25 Pre-mRNA splicing factor PF10197 [flax] [poplar] Cir_N N-terminal domain of CBF1 interacting co-repressor CIR
Representative CDS sequence Show only first row Show all	>Lus10038730 pacid=23150476 polypeptide=Lus10038730 locus=Lus10038730.g ID=Lus10038730.BGIv1.0 annot-version=v1.0 ATGGCGCTGAAGTTCTTGAACAAGAAGGGATGGCATACCGGCAGCCTGAGGAACATAGAGAACGTCTGGAAAGCCGAGCAGAAACACGAGGCCGAGGAGA AGAAATTGGACGAGCTCCGTAAGCAGATCCAGGAGGAACGCGAGCGATCAGAGTTCCGTCAACTCCAGGAGCAAGCCGGCCTTGTACCGAGGCAGGAGCG GTTGGAATTTCTATACGATGGAGGACTTTCCGTCGGCAAAGGAAACGCCAGCACTTCTTCTGGCGCCGGAGTGGCATTCAAGGAGCTCGAACAGGCTGTT GCCGGCGGTGGCACCAAAGCTTCGGAATCAGCTGCTTCTACGTCTTCTTCTTCTGCTGCTGCGACTGGTGCACCGGGAGCTTTGTTCGAGGACAAGCCTC AGTCTGCAAATGACGCCTGGAGGAAGCTTCACTCTGATCCTCTACTTATGATCCGCCAGCGGGAGCAGGAAGCTCTTGCCCGCATCAAGAACAACCCTGT CCAGATGGCTCTCATTCGCAAATCGGTTCAAGGAAATGGAGAGAAGGAGAAGAAGGGTGGTGATAGAAAGAAGCACAAGAAGAAACACCGCCGTAGCGAC AAGCATTCATCATGGTCGAAGGGGCTATCAGATTCGGAAGATGATGATAGAAGTGGAGAGAGGAACAGAAGTTCTCACAAACACAGGAGCTCGAAATACC ATGATCATTCTGCTTCGGATTCGGAAGATGATGGTAGAAATAGAGACGGGAAGAGAAGTTCTAACAAACACAATAGCTCGAAACACCATGACCATCTTGC TGCGTCGGACGACGAATCAAGTGGAAGAGATAGCAGGAAAAGAAAGGATACTTCTAAGGGATTCCGAGACCGTTCTCCTGGCCGGTTCTCCGAGAAAGCA GATACCACAACACATTATGACCGACTGGAAAGAGACCGGGAGAGGCCAAAGAACGATAAGAGATATTCTGATGGCTTGCCAGGCCGTGAAGCAGTACCTT ACTACGGTACATCTGTTTCCGCGGTCAACCAGGATTCCTATCGCAGCAGACGCAGGAATGCACCTCCAAAACTCTCGGAGGAAGAAAGAGCAGCAAGGTT GAGGGAGATGCAGTTGGACGCAGAGATCCACGAAGAGCAGAGGTGGAAGCGATTGAAGAAGGCCGACGAGGATGATGTACGAGAAGACGCTCAAGCGAAG CAAACTCGTGGGGGAAAGAACTTCTTAGATGCTGCTCAGAAAAGCATCTATGGTGCCGAGAAGGGTGGTAGCTCCACCATTGAGGAAAGCGTCCGCCGAC GAGCTTATTACTCGCAAAGGTCGGAAACAGGCGGAAACGCCTTCCGACGATGA
AA sequence Show only first row Show all	>Lus10038730 pacid=23150476 polypeptide=Lus10038730 locus=Lus10038730.g ID=Lus10038730.BGIv1.0 annot-version=v1.0 MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEEKKLDELRKQIQEERERSEFRQLQEQAGLVPRQERLEFLYDGGLSVGKGNASTSSGAGVAFKELEQAV AGGGTKASESAASTSSSSAAATGAPGALFEDKPQSANDAWRKLHSDPLLMIRQREQEALARIKNNPVQMALIRKSVQGNGEKEKKGGDRKKHKKKHRRSD KHSSWSKGLSDSEDDDRSGERNRSSHKHRSSKYHDHSASDSEDDGRNRDGKRSSNKHNSSKHHDHLAASDDESSGRDSRKRKDTSKGFRDRSPGRFSEKA DTTTHYDRLERDRERPKNDKRYSDGLPGREAVPYYGTSVSAVNQDSYRSRRRNAPPKLSEEERAARLREMQLDAEIHEEQRWKRLKKADEDDVREDAQAK QTRGGKNFLDAAQKSIYGAEKGGSSTIEESVRRRAYYSQRSETGGNAFRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	0	1
AT2G27800			Tetratricopeptide repeat (TPR)...		Lus10011029 [exp]	1.4	0.8286
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Lus10011116 [exp]	2.4	0.8070
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	4.4	0.8295
AT1G02290			unknown protein		Lus10028606 [exp]	5.5	0.8159
AT5G26200			Mitochondrial substrate carrie...		Lus10025015 [exp]	6.2	0.7781
AT5G55600			agenet domain-containing prote...		Lus10016606 [exp]	6.5	0.8273
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10027883 [exp]	6.6	0.8183
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10030485 [exp]	7.0	0.8037
AT4G00755			F-box family protein (.1.2)		Lus10036561 [exp]	7.5	0.7765
AT5G59830			unknown protein		Lus10040857 [exp]	7.7	0.7548

Compare expression of checked genes

Lus10038730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.