Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57820 603 / 0 ORTH2, VIM1 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT5G39550 363 / 5e-118 ORTH1, VIM3 VARIANT IN METHYLATION 3, ORTHRUS 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G66040 353 / 4e-114 ORTH4, VIM4 VARIANT IN METHYLATION 4, ORTHRUS 4, Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G66050 353 / 5e-114 ORTH5, VIM2 VARIANT IN METHYLATION 2, ORTHRUS 5, Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G57800 352 / 3e-113 ORTH3, VIM5 VARIANT IN METHYLATION 5, ORTHRUS 3, zinc finger (C3HC4-type RING finger) family protein (.1) AT4G08590 224 / 1e-66 VIM6, ORTHL, ORL1 VARIANT IN METHYLATION 6, ORTHRUS-LIKE 1, ORTH-LIKE 1, ORTHRUS-like (.1.2) AT5G13960 76 / 3e-14 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT1G17770 62 / 7e-10 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT4G13460 62 / 8e-10 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G22740 59 / 5e-09 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039127 [exp] 481 / 1e-163 AT5G39550 776 / 0.0 VARIANT IN METHYLATION 3, ORTHRUS 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10031984 [exp] 73 / 3e-13 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10041515 [exp] 71 / 1e-12 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10023714 [exp] 57 / 3e-08 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Lus10026137 [exp] 57 / 3e-08 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10035115 [exp] 57 / 3e-08 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10014457 [exp] 57 / 4e-08 AT2G33290 444 / 2e-149 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) Lus10003017 [exp] 55 / 1e-07 AT2G35160 251 / 1e-73 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10029470 [exp] 54 / 2e-07 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G067700 [exp] 398 / 5e-131 AT1G57820 811 / 0.0 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) Potri.003G162400 [exp] 395 / 2e-129 AT1G57820 813 / 0.0 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) Potri.014G143900 [exp] 76 / 4e-14 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.002G237950 [exp] 76 / 5e-14 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.008G173100 [exp] 71 / 1e-12 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.010G064300 [exp] 70 / 3e-12 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.003G083100 [exp] 67 / 3e-11 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.003G188700 [exp] 55 / 1e-07 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.001G036800 [exp] 54 / 2e-07 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.006G027600 [exp] 49 / 1e-05 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10038731 pacid=23150363 polypeptide=Lus10038731 locus=Lus10038731.g ID=Lus10038731.BGIv1.0 annot-version=v1.0 ATGGCTCCTGCAATCCAACTACCTTGCGACGGCAACGGCGACTGCATGGTCTGCAAGGTCAAACCACCGGCTGAAGAAACCCTAACCTGCTCCACCTGTG CTGCTCCGTGGCACGTTCCCTGCCTGGCTACTCCGATTGAGTCCCTGGCTTCCGTTCTCCAGTGGGAGTGTCCCGACTGTAACCTCGACGCTCCCGCTGC TGCCCCGGTTAAATCCGGGAATGAGCTGGTGGCTGCAATCCAAGCGATCGAGGCGGATTCCAGCCTCTCCGAGCAGGAGAAGGCTCGGAAGAGGCAGGAG TTGCTCAGTGGGAAGAGCGTTGACCAGGGCGATGATGACGAGGAACGTAAGGGAAAAGGCAAGATGAGTGCTGCGATGGATGCTTTGAAACTCCTGGGCG ACAGCTTCAATTGCGCCTTTTGCATGCAGCTGCCTGAGAGGCCAGTCACGACGCCATGCGGGCACAACTTCTGCTTAAAATGCTTCGAGAAATGGACGGG GCAAAAGAAGTCCACCTGTGCAAAGTGCCGAGCAGAAATTCCTAGGAAGATGGCGCTACAGCCCCGCATTAATGCTTCGCTTGTTGCTGCTATCCGTTTG GCCAAGGTATCGAGGTCCATTTCTGATGGAGCACCTGGCAAGGTGTATCATTTTGTGCACAACCAAAACAGGCCGGACACTGCTTATACTACTGAGCGGG CTAAGAAGACTGGCGAAGATCATGGTGAATGGTTCCTATACACTGGAAGCGGAGGGAGGGATCTTACAGGAAACAAAAGGACCAATAAAGACCAGTCCTC TGACCAGAAGTTCGAGGCGTATAACCAGGCCCTTAAAGTTAGCTGCTTGAAAGGGTATCCGGTTAGAGTTGTAAGGTCCCACAAGGAAAAGCGATCTAAT TATGCGCCGGACGCTGGAGTTCGCTATGATGGAGTCTACCGGATCGAGAAATGTTGGAGGAAAGTTGGGATACAGGGTTTCAAGGTCTGCAGGTATCTGT TTGTCCGATGCGACAATGAGCCAGCTCCCTGGACAAGTGATGAGCATGGGGACAGGCCTAGACCATTGCCTGTAATCCCGGAGTTGAAGAATGCCATTGA CTTGGCTGAGAGGAAAGATAGTCCGTCATGGGACTTCGATGAAGAGAGCAGCCGCTGGATATGGAAGAAAGAGCCGCCGGCAAGCAAGGAGAAAGTGAAC CCTGTAGATCCCGGGCAGATCAAGAGATCAAGGGGGGTTATCCGGCGAGCACAGAACCAGAACTTATCAGAAAAGCTCCTGAAAGAGTTCAGCTGCCACC TATGCCGGCAAGTGATGAACGTGCCGGTCACAACACCATGCTCCCACAACTTCTGCAAGGAGTGCCTCGATAAGAAGTTCCCGGACAAGAAGTTTGTTCA AGAGAGGGGTAGAGGCGGCCGCACTCTCCGGTCCAAGAAAATCGTGCTGAACTGCCCTTGCTGCCCTGTTCAAGAGGGGGGTAGAGGCGGCCGCACTCTC CGGTCCAAGAAAATCGTGCTGAACTGCCCTTGCTGCCCAACCGACATCTCCGATTTCCTCAAGAACGTCAAGGTGAACAGTGACGTGATGAATGCGATCA ATGGCCTGAAGAAAGCGATGGACGAATCAAAGGCAGTGGCCGAAGCAGCAGCAGCATCGGCTAGTGGAAGCGGTGGTGAATCTGAGGAGCCGGAGGAGGA AGAGGAAGAAGAAGAGGAGGGTGAAGATGGCAATGGTGAGAGCAAGAGACAGAAAGTTGATGGGAATGATTCACCTTCAAGCCCCCTCCATGTCCAGTCC CCTGAGAACTAA
AA sequence Show only first row Show all	>Lus10038731 pacid=23150363 polypeptide=Lus10038731 locus=Lus10038731.g ID=Lus10038731.BGIv1.0 annot-version=v1.0 MAPAIQLPCDGNGDCMVCKVKPPAEETLTCSTCAAPWHVPCLATPIESLASVLQWECPDCNLDAPAAAPVKSGNELVAAIQAIEADSSLSEQEKARKRQE LLSGKSVDQGDDDEERKGKGKMSAAMDALKLLGDSFNCAFCMQLPERPVTTPCGHNFCLKCFEKWTGQKKSTCAKCRAEIPRKMALQPRINASLVAAIRL AKVSRSISDGAPGKVYHFVHNQNRPDTAYTTERAKKTGEDHGEWFLYTGSGGRDLTGNKRTNKDQSSDQKFEAYNQALKVSCLKGYPVRVVRSHKEKRSN YAPDAGVRYDGVYRIEKCWRKVGIQGFKVCRYLFVRCDNEPAPWTSDEHGDRPRPLPVIPELKNAIDLAERKDSPSWDFDEESSRWIWKKEPPASKEKVN PVDPGQIKRSRGVIRRAQNQNLSEKLLKEFSCHLCRQVMNVPVTTPCSHNFCKECLDKKFPDKKFVQERGRGGRTLRSKKIVLNCPCCPVQEGGRGGRTL RSKKIVLNCPCCPTDISDFLKNVKVNSDVMNAINGLKKAMDESKAVAEAAAASASGSGGESEEPEEEEEEEEEGEDGNGESKRQKVDGNDSPSSPLHVQS PEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57800		ORTH3, VIM5	VARIANT IN METHYLATION 5, ORTH...		Lus10038731 [exp]	0	1
AT4G36180			Leucine-rich receptor-like pro...		Lus10042177 [exp]	2.4	0.9518
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043126 [exp]	4.0	0.9513
AT3G56370			Leucine-rich repeat protein ki...		Lus10025223 [exp]	6.3	0.9444
AT3G02820			zinc knuckle (CCHC-type) famil...		Lus10030564 [exp]	7.7	0.9359
AT3G47460		ATSMC2	Structural maintenance of chro...		Lus10027215 [exp]	7.9	0.9452
AT2G37960			unknown protein		Lus10021116 [exp]	11.6	0.9436
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10007522 [exp]	12.7	0.9395
AT3G06868			unknown protein		Lus10024784 [exp]	13.3	0.9353
AT4G20940			Leucine-rich receptor-like pro...		Lus10038544 [exp]	14.3	0.9325
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	14.7	0.9350

Compare expression of checked genes

Lus10038731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.