Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10770 205 / 5e-61 Eukaryotic aspartyl protease family protein (.1) AT1G79720 180 / 2e-51 Eukaryotic aspartyl protease family protein (.1) AT1G01300 172 / 2e-48 Eukaryotic aspartyl protease family protein (.1) AT5G10760 166 / 2e-46 Eukaryotic aspartyl protease family protein (.1) AT3G61820 160 / 5e-44 Eukaryotic aspartyl protease family protein (.1) AT3G18490 159 / 1e-43 Eukaryotic aspartyl protease family protein (.1) AT3G20015 148 / 8e-40 Eukaryotic aspartyl protease family protein (.1) AT2G03200 145 / 6e-39 Eukaryotic aspartyl protease family protein (.1) AT1G64830 136 / 1e-35 Eukaryotic aspartyl protease family protein (.1) AT2G42980 135 / 1e-34 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039126 [exp] 295 / 7e-99 AT1G01300 139 / 2e-38 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 221 / 4e-67 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 189 / 1e-54 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 184 / 2e-52 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 179 / 4e-51 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10030246 [exp] 154 / 2e-42 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10026244 [exp] 150 / 2e-40 AT5G10770 303 / 5e-98 Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 142 / 1e-37 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 139 / 2e-36 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G000600 [exp] 383 / 6e-130 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 213 / 5e-64 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.018G015100 [exp] 203 / 3e-60 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.003G185175 [exp] 198 / 3e-58 AT1G79720 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G041700 [exp] 196 / 2e-56 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 191 / 9e-56 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 191 / 1e-55 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 184 / 4e-53 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 177 / 1e-50 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 173 / 6e-49 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10038732 pacid=23150503 polypeptide=Lus10038732 locus=Lus10038732.g ID=Lus10038732.BGIv1.0 annot-version=v1.0 ATGGTGAACTTGAACAAACTTGTGCTAGTTTCGTCCTTCATCAATCTGAATCTCCTCGTCTCCTTTCTTCCTCCTTCACACTCCTCTCGATTTCTTCTTA GAAACGGCAGCTCCACCGACATTCATCTGGAAATTTACCATGCCGATCACCACCGCAATCACTCACTCTCCGACCTCCTCTCCCGCGACGAGAACCGATT CTATTCAATTCGAAACCGAATCAACAGAACATCCAAATCCATAAACCCCGATTCGGCCAGCGGAGGCAGCAGCAGAGTGCCGCTGACGTCGGGTATGTCG ATCGGGTCGGGCAACTACTACGCGAAGCTGGGGCTGGGGACGCCGGCGAAGTACTACGCGATGCTGATGGACACGGGGAGCTCGCTGTCGTGGCTGCAGT GCAAGCCGTGTATGATCTCGTGCCACCAGCAGGCGGACCCGGTGTTCGATCCCTCTGCTTCGAAGACGTACAGGAAGCTACAGTGCGCCAGCAGGGAGTG CTCTTCGCTGAAGGCGGCGACGCTGAACGATCCAGGGTGCGAGGCGGAATCGAATGCGTGCATCTACACGGCTAGCTATGGGGACGCGTCGTACTCGATC GGGTATTTGAGCCAGGATGTGCTGACCGTTGATTCGAAGAGTGTGGTGGTGCCCAAGTTTACTTACGGGTGTGGGCAGGACAACGAAGGACTGTTTGGTA AGGCCGATGGGATCGTCGGTTTGGCGCGTGACAAACTCTCGCTTCTATCTCAGGTAAGAAGATTAGGCATCGGCAGGGGGGGGGGCCGCCCGCCCACCCC CGCCGCACCGACGGCGAGTTTAACCTCGTCACCATCCTCCCCGGCGGGAGGCTACTTAGCACTCGGCAGCTCAGCCTTCACATCCATACCCTACAAGTTC ACTCCTTTAATCACCGATCCGGCCAACCCCAGCCTCTACTTCCTCAAACTGACATCAATCACCGTAGCCGGAAAGCCCCTAGCAGTAAACCCTAATTCAT ACAAAGTCCCCACAATTCTCGACTCGGGAACCGTAATCACCAGAATCCCTTCGCCCGTCTTCACCGCCCTACAGGCCGCAGTCGTCAAAGCAGTGTCGGG GAAGTTTCCCCAGGCGCCGGCGTATTCCATTCTCGAGACTTGTTTCAAAGGGAAATTAAACGACGTGGCAGCTGCGGCCCCCGCCGTCGGGCTCGTGTTT CAGGGAGGTTCGATCCTGGACGTGAAGGCAGGGAATCTGCTGGGGGATATTCATGCTGGTGGATATTCCTGA
AA sequence Show only first row Show all	>Lus10038732 pacid=23150503 polypeptide=Lus10038732 locus=Lus10038732.g ID=Lus10038732.BGIv1.0 annot-version=v1.0 MVNLNKLVLVSSFINLNLLVSFLPPSHSSRFLLRNGSSTDIHLEIYHADHHRNHSLSDLLSRDENRFYSIRNRINRTSKSINPDSASGGSSRVPLTSGMS IGSGNYYAKLGLGTPAKYYAMLMDTGSSLSWLQCKPCMISCHQQADPVFDPSASKTYRKLQCASRECSSLKAATLNDPGCEAESNACIYTASYGDASYSI GYLSQDVLTVDSKSVVVPKFTYGCGQDNEGLFGKADGIVGLARDKLSLLSQVRRLGIGRGGGRPPTPAAPTASLTSSPSSPAGGYLALGSSAFTSIPYKF TPLITDPANPSLYFLKLTSITVAGKPLAVNPNSYKVPTILDSGTVITRIPSPVFTALQAAVVKAVSGKFPQAPAYSILETCFKGKLNDVAAAAPAVGLVF QGGSILDVKAGNLLGDIHAGGYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10770			Eukaryotic aspartyl protease f...		Lus10038732 [exp]	0	1
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	1.7	0.9795
					Lus10000488 [exp]	2.4	0.9409
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	2.8	0.9783
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Lus10007023 [exp]	3.3	0.9246
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	3.9	0.9664
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10016856 [exp]	4.0	0.9159
AT2G30300			Major facilitator superfamily ...		Lus10026422 [exp]	4.9	0.9630
AT1G01300			Eukaryotic aspartyl protease f...		Lus10039126 [exp]	5.5	0.9309
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	5.9	0.9529
					Lus10026628 [exp]	7.2	0.9214

Compare expression of checked genes

Lus10038732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.