Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17150 452 / 3e-156 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G14290 310 / 9e-100 alpha/beta-Hydrolases superfamily protein (.1) AT3G23540 306 / 2e-98 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039125 [exp] 675 / 0 AT4G17150 551 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001114 [exp] 309 / 2e-99 AT4G14290 696 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041237 [exp] 305 / 7e-98 AT4G14290 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10034017 [exp] 283 / 7e-89 AT4G14290 667 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10021948 [exp] 273 / 4e-85 AT4G14290 674 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10011949 [exp] 43 / 0.0004 AT5G20520 437 / 1e-155 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G001000 [exp] 593 / 0 AT4G17150 644 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G000700 [exp] 583 / 0 AT4G17150 608 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G029200 [exp] 307 / 2e-98 AT4G14290 680 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G200400 [exp] 294 / 2e-93 AT4G14290 672 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038733 pacid=23150521 polypeptide=Lus10038733 locus=Lus10038733.g ID=Lus10038733.BGIv1.0 annot-version=v1.0 ATGATTGAACAGTTCATCAATTTTGTCATCCGCCCTCCAAGGGCGGATTATAACCCAGATCAGTACCTATGGGAAAAGGATTTCACACTAGCTAGTAGAG CCTACAAACGGCAAGACTTAGAGGCAAGTATGGACATCAATTCATCTGCATTTCTCTTACGAACACGCGGGGTCATACGTTGCAGGGTAGCCATTACGTG CCTTCACCTTGCACGAGGCTTACTTTGTTCTTGTTTCTGGCAGAAAGATGACCTCAAGGCTGCGGTTTCTTATCTAAGAAGCAAGAAGAATATATCGTGT ATTGGCCTTTGGGGACGATCTATGGGCGCGGTCACTAGCATTCTTTATGGAGCAGAAGATCCATCTATAGCTGGAATGGTGCTGGACAGTGCCTTCTCGA ATTTATTCGATCTAATGATGGAACTTGTAGACGTCTACAAAATTCGGCTGCCAAAGTTCACTGTTAAGATGGCGTTGCAGTACATGCGGCGGGTGATTCA AAAGAAGGCAAAATTTGACATAATGGATCTCAACAGTCTAAAGGTTGCGCCTAAATCATTCATTCCTGCTTTGTTTGGTCATGCAAGTGATGACAAGTTC ATACCATCCCATCATTCGGACATCATCTTCAAATCTTATGCAGGTGACAAAAATATGATAAAGTTTGATGGTGACCACAACTCGTCACGGCCACAATTCT ATTACGATTCTGTCTCCATTTTCTTCTTCAATGTCCTTCATCCTCCTCAAACTACTGCTTCTGCAGTGAAGCTTGATAAATATTATAACCTCTCAGACTT GAAGCTTGGTGCTGACTTGGATGAGAGTCTTCTCTACGAGATAATCGCAGGCATCCGTTCTTCAACTACTGATGCTGCAAGTTCATCTTCTGCTCCTCCT AGTATCCCAACTGCAAAACCTGTCGACAAACTTCTTCTTGAAGTTTCCCCTGCCGTTAACTTGGAGGCAGTTGGTAGCACAAATGATAAGGGCAGCAGCT ACAATGAGCCACTAAATTTGCAGGATAAGCCAAATGACCAAAGCGAGGAATGCTGCTCCTATACAAGCTCAAACCGGGAGAGTTGGGGAAGATGCTCGTC TCTCGGTGGCAGCGATGAAGAATCTTCGGCTGAATGTCGAACTGTAGATAAAAGTCACGAGAGTTCTGCTCTAAGGGCATTTGCCACGCCACTACGGAAC ATACAAAAGAAGAAACCAGCGGCTGGAGGAGCCACTGCCAGTGCAGCAGTGCCTCAAACGGAACAGAAGAAAAAACTGAAGAAATCTTTGCTGAGGAAGA TGAAGGGCGAGAAGCTAGAAAAGCTCGAAGCTTTAAGCAAACGGCTGCACCATTGTATTCTAAGACGAGTAAATCATAAGAGACATCTTTCTTCTTGA
AA sequence Show only first row Show all	>Lus10038733 pacid=23150521 polypeptide=Lus10038733 locus=Lus10038733.g ID=Lus10038733.BGIv1.0 annot-version=v1.0 MIEQFINFVIRPPRADYNPDQYLWEKDFTLASRAYKRQDLEASMDINSSAFLLRTRGVIRCRVAITCLHLARGLLCSCFWQKDDLKAAVSYLRSKKNISC IGLWGRSMGAVTSILYGAEDPSIAGMVLDSAFSNLFDLMMELVDVYKIRLPKFTVKMALQYMRRVIQKKAKFDIMDLNSLKVAPKSFIPALFGHASDDKF IPSHHSDIIFKSYAGDKNMIKFDGDHNSSRPQFYYDSVSIFFFNVLHPPQTTASAVKLDKYYNLSDLKLGADLDESLLYEIIAGIRSSTTDAASSSSAPP SIPTAKPVDKLLLEVSPAVNLEAVGSTNDKGSSYNEPLNLQDKPNDQSEECCSYTSSNRESWGRCSSLGGSDEESSAECRTVDKSHESSALRAFATPLRN IQKKKPAAGGATASAAVPQTEQKKKLKKSLLRKMKGEKLEKLEALSKRLHHCILRRVNHKRHLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10038733 [exp]	0	1
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022927 [exp]	5.0	0.7231
AT5G14210			Leucine-rich repeat protein ki...		Lus10022340 [exp]	5.1	0.7689
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10030013 [exp]	7.9	0.7145
AT1G68330			unknown protein		Lus10041430 [exp]	8.1	0.6947
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10012689 [exp]	12.2	0.7570
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10012271 [exp]	14.1	0.6665
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031883 [exp]	15.0	0.7231
AT5G49100			unknown protein		Lus10006504 [exp]	16.2	0.7148
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10042757 [exp]	18.3	0.7266
AT3G26700			Protein kinase superfamily pro...		Lus10012585 [exp]	24.5	0.6727

Compare expression of checked genes

Lus10038733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.