Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64620 49 / 1e-07 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039120 [exp] 105 / 9e-29 AT5G64620 69 / 5e-15 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Lus10038738 [exp] 97 / 1e-25 AT5G64620 67 / 4e-14 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G001600 [exp] 59 / 4e-11 AT5G64620 82 / 9e-20 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.008G013400 [exp] 50 / 9e-08 AT5G64620 66 / 8e-14 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.008G102600 [exp] 45 / 5e-06 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G191500 [exp] 42 / 6e-05 AT2G31430 104 / 2e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.011G114700 [exp] 39 / 0.0006 AT5G64620 47 / 1e-06 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10038737 pacid=23150375 polypeptide=Lus10038737 locus=Lus10038737.g ID=Lus10038737.BGIv1.0 annot-version=v1.0 ATGTCTTTCCCACTGATCACCATCGTCCTCCTCCTCGCAACCGCCACGTCATCATCGGCGGTGAACTCGACCCCACAGGTACAAAGCTTCTGCAAGAAGA CATCAATGCCACCGCAATGCGAATTCTCCCTCAGCCTCGACCCGTCCACGTCACGCGCCCGCGACCCCTTCACGCTGGCGTCCATAGCGGTGAGGCTCTC CTACCTCAACGCCACCGAGACCCAGAACTTCATCGCCGGCCTCCAGAAGAGCGGCGGAGACGGCGGGACGGTCGGGCTGAAGCGGCTGCGCGTGTGCGCG TCGAGGTACAGCCTGGCGCTTGGGATGGTGGCGAACATGGACGGGGACATCAACGACGACAATTATTCCAACTTGGCATACGAGGCTAGGGAGGCCAAGG CTTACGTGGACAGGTGCGAGGCTGAATGGACGAAGGCCACGTGGAAGCCTATGGGGATTAGGAATATGGTTTTGGGTGTGCTGTTTGAGGTTATTGCGGC TATTGGGAATTCTGTCGCCGGTCGTCCTTAG
AA sequence Show only first row Show all	>Lus10038737 pacid=23150375 polypeptide=Lus10038737 locus=Lus10038737.g ID=Lus10038737.BGIv1.0 annot-version=v1.0 MSFPLITIVLLLATATSSSAVNSTPQVQSFCKKTSMPPQCEFSLSLDPSTSRARDPFTLASIAVRLSYLNATETQNFIAGLQKSGGDGGTVGLKRLRVCA SRYSLALGMVANMDGDINDDNYSNLAYEAREAKAYVDRCEAEWTKATWKPMGIRNMVLGVLFEVIAAIGNSVAGRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038737 [exp]	0	1
AT2G39180		CCR2, ATCRR2	CRINKLY4 related 2 (.1)		Lus10041404 [exp]	13.2	0.8558
AT1G70590			F-box family protein (.1)		Lus10004621 [exp]	21.8	0.8027
AT3G43270			Plant invertase/pectin methyle...		Lus10010170 [exp]	30.5	0.8125
AT1G05870			Protein of unknown function (D...		Lus10025562 [exp]	39.0	0.8051
AT3G61260			Remorin family protein (.1)		Lus10017811 [exp]	52.2	0.7914
AT2G23970			Class I glutamine amidotransfe...		Lus10033793 [exp]	52.6	0.7400
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Lus10028171 [exp]	54.7	0.8325
AT1G06260			Cysteine proteinases superfami...		Lus10039901 [exp]	57.1	0.8324
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10009419 [exp]	58.1	0.7554
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10025085 [exp]	60.0	0.8193

Compare expression of checked genes

Lus10038737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.