Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64620 58 / 8e-11 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1) AT3G17152 52 / 2e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17150 47 / 1e-06 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G47960 39 / 0.0009 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039120 [exp] 248 / 4e-85 AT5G64620 69 / 5e-15 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Lus10038737 [exp] 91 / 3e-23 AT5G64620 56 / 7e-10 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Lus10027947 [exp] 54 / 4e-09 AT1G47960 111 / 1e-30 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10000822 [exp] 47 / 1e-06 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10022409 [exp] 44 / 2e-05 AT5G64620 155 / 3e-48 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Lus10017345 [exp] 43 / 3e-05 AT3G17220 89 / 1e-22 pectin methylesterase inhibitor 2 (.1) Lus10016317 [exp] 42 / 5e-05 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10001658 [exp] 41 / 0.0001 AT1G48020 86 / 4e-21 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10003530 [exp] 40 / 0.0003 AT1G47960 91 / 5e-23 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G013400 [exp] 133 / 1e-39 AT5G64620 66 / 8e-14 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.016G001600 [exp] 113 / 5e-32 AT5G64620 82 / 9e-20 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.002G191500 [exp] 54 / 2e-09 AT2G31430 104 / 2e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.008G102600 [exp] 51 / 2e-08 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.007G108301 [exp] 49 / 2e-07 AT5G64620 163 / 1e-51 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.004G016500 [exp] 45 / 6e-06 AT4G02250 73 / 2e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.009G083500 [exp] 44 / 7e-06 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.010G209800 [exp] 44 / 8e-06 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.006G134900 [exp] 44 / 9e-06 AT5G64620 76 / 2e-17 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.002G066300 [exp] 41 / 0.0001 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10038738 pacid=23150518 polypeptide=Lus10038738 locus=Lus10038738.g ID=Lus10038738.BGIv1.0 annot-version=v1.0 ATGTCCGCCTCCTTCCTCGTCCCGCTACAACTACTCCTTCTCATCTCAACCGCCGCCATCACCATCGCCGCCACCCCGACGAACCTCGTCCAGCAACTCT GCAAGAAATCCTCCGCCTACGCGCTGTGCGTGGAGGCGCTGTACGCGGACTCCAGGACGCCGGACGCGGACCGGACCACCATGGCGTTCATCTCCGTCGG GCTGGCCTACCAGAACGCCACCGGGACTCGCTCCTACATCTCCAGCCTCCTTCGCGGCCGGGCCGGGCGGGAGCGGCTCAGCAGATGCGGATCGGACTAC GACGTCGCGATCAACAAGATGGAGCGGGCCTCCAACGACTTGAATTCGGAGACGTACTACGGCCTGGCTGAGCTGGCAAAGGGAGCCGCCGACGCTGCCA AACACTGCCAGGCTGTATTCGCGAAGTCCCCGTGGCGGCCTATGGGGAACCGGAACCGGGTGTTGGCGGTTTTGTGTGAGGTTATTGGGGTGATTGGGAA GTCCTTCACCGGCAAAGATTGA
AA sequence Show only first row Show all	>Lus10038738 pacid=23150518 polypeptide=Lus10038738 locus=Lus10038738.g ID=Lus10038738.BGIv1.0 annot-version=v1.0 MSASFLVPLQLLLLISTAAITIAATPTNLVQQLCKKSSAYALCVEALYADSRTPDADRTTMAFISVGLAYQNATGTRSYISSLLRGRAGRERLSRCGSDY DVAINKMERASNDLNSETYYGLAELAKGAADAAKHCQAVFAKSPWRPMGNRNRVLAVLCEVIGVIGKSFTGKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038738 [exp]	0	1
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	1.4	0.9573
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10039565 [exp]	2.4	0.9165
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	3.2	0.9487
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10022915 [exp]	4.7	0.9047
AT2G39130			Transmembrane amino acid trans...		Lus10039190 [exp]	6.7	0.9160
AT4G24480			Protein kinase superfamily pro...		Lus10042868 [exp]	6.7	0.9063
AT4G32140			EamA-like transporter family (...		Lus10041032 [exp]	8.5	0.9113
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	8.8	0.9014
					Lus10011059 [exp]	9.5	0.9105
AT1G15860			Domain of unknown function (DU...		Lus10039198 [exp]	10.4	0.9033

Compare expression of checked genes

Lus10038738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.