Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47780 886 / 0 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 643 / 0 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 566 / 0 GAUT3 galacturonosyltransferase 3 (.1.2) AT2G46480 466 / 2e-158 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G25140 452 / 1e-152 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G30575 454 / 2e-152 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT1G06780 449 / 7e-151 GAUT6 galacturonosyltransferase 6 (.1.2) AT1G18580 446 / 2e-150 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 436 / 3e-146 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT3G02350 427 / 9e-143 GAUT9 galacturonosyltransferase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039119 [exp] 942 / 0 AT5G47780 691 / 0.0 galacturonosyltransferase 4 (.1) Lus10009311 [exp] 638 / 0 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 634 / 0 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 633 / 0 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 589 / 0 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 560 / 3e-180 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018554 [exp] 468 / 5e-159 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10013506 [exp] 455 / 8e-154 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1) Lus10007979 [exp] 454 / 2e-153 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G001700 [exp] 959 / 0 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 812 / 0 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 640 / 0 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 631 / 0 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 590 / 0 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.005G218900 [exp] 501 / 1e-170 AT1G06780 690 / 0.0 galacturonosyltransferase 6 (.1.2) Potri.002G246500 [exp] 455 / 2e-153 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.004G111000 [exp] 447 / 1e-150 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.017G106800 [exp] 447 / 1e-150 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.019G108900 [exp] 445 / 5e-150 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10038739 pacid=23150533 polypeptide=Lus10038739 locus=Lus10038739.g ID=Lus10038739.BGIv1.0 annot-version=v1.0 ATGATGATTCTGAGGAACGTGGTGGTGGTGATGCTATTCGTCACTGTGATTGCTCCGATTGCTCTCTACACTGATAGATTCGCCGCCTTCGCTCCTTCTT CCACTAGGATCGATTTCCTGGAAGACGTTACTTCGTTTACACGCCCAGCTGATTCCGGCCGTCTCAACGTGCTGCCTCAGGAGTCGTCCACCGTTTTGAA AGAACCGATTGGGGTTGTTTACACCACGAACTTGACCCAATCTTCTCCTGATGGGGTTGCGGCTTCCGATGCTGGAAATCAGAATTCAATTGCAGCTGAT TTGCAATCTCAAGACACAAGAGAGCACAAATATGCTAGAGTTTTGTCGGCAACCGATGAGCATGATCAGTCTCAACCGGATGCTGTCATCAAAAGGGTCA CTGATACTACCAATGCTAAGCATGAATCGAGAAATGATGGCACGGATACCAAGCCCAAGGATCCGAAGTCCTCGACCTCTAACAGAGTAGCTCACAATGC TTCTCAAGAACTGCTTGAGCGACAAGCTGCTGGGAACTATGGAAAAACTACTGAAAAGGATCACCGAAAAGCGAAATCTGGGAAACAAACAGATCAAACT GCTGCTATGTCGGATGCTCGGGTACGTCAAATGAGAGATCAGCTGATCAGGGCAAAAGTATTCCTTTCACTCCCTGCAACAAACAATAATCCACACTATA CAAGGGATCTTAGAATGCGGGTGAAGGAAGTCACACGTGTCCTTGGAGAAGCAACTAAAGACTCGGAGCTGCAAAAAAATGCCGTTGAGAAAATGAAGGC AATGGAGCAGGCCCTAACAAAAGGCAAGCAGATACAAGATGACTGTGCCACTGGGGTAAAGAAACTCCGTGCAATGCTACATTCCACAGAGGAGCAGCTC CGTGTGCATAAAAAGCAGACCATGTTCTTGACACAGTTGACAGCAAAAACCCTTCCTAAGGGTCTTCATTGTCTTCCGTTGCGGCTGACCACTGAGTATT ATTCGTTGAATACTTCTCAACAACAGTTCCCAAATCAGGAAAAACTGGAAGACCCTCTGTTGTATCATTATGCTTTATTCTCAGATAATGTTCTCGCAGC TTCCGTTGTTGTGAACTCTACCATCACACATGCCAAGGATCCCTCCAAGCATGTTTTCCACATTGTCACCGATAGACTCAATTATGCAGCGATGAGGATG TGGTTTCTGGTGAATCCACCTGGCAAGGGAACTATTCAAGTTCAAAACATCGAGGAGTTCACATGGTTAAATGCGAGTTACAGTCCTGTGCTGAAGCAGT TGGGATCTCCGTCAATGATAGACTACTACTTCAGGGCACATCGGGCTAATTCAGACCCAAATTTGAAATACCGTAATCCAAAGTACTTATCCATCTTGAA CCATCTTCGGTTCTACCTGCCAGAGATATTCCCAAAGCTGAACAAGGTCTTGTTCGTGGACGACGATATAGTAGTGCAGAAGGATCTTGCTGCACTTTGG GCCCTTGATTTGAAGGGTAACGTGAACGGTGCAGTGGAGACTTGTGGAGAGAGCTTCCATCGGTTTGATCGATATCTCAACTTCTCGAATCCCCTGATCT CCAAGAACTTCCAGCCGCATGCCTGTGGATGGGCATATGGGATGAATGTCTTTGATTTGGATCAGTGGAGAAGGAAAAACATCACCGAAGTGTACCACAA GTGGCAGAAACTGAATCACGACCGAACGTTGTGGAAGTTGGGGACACTGCCGCCAGGGCTGATAACGTTCTGGAAACAAACACATCCACTGGACCGATCA TGGCACGTGCTGGGTCTGGGTTACAACCCGAGCATGAACCAGAAGGATATAGAGAGAGCAGCAGTGATACACTACAACGGGAACATGAAGCCGTGGCTGG AGATAGGGATACCGAAGTATCGTGGATACTGGGAGAAGTATGTGGACTACGAGCATGTCTATTTGAGGGAATGCAACATCAACCCTTGA
AA sequence Show only first row Show all	>Lus10038739 pacid=23150533 polypeptide=Lus10038739 locus=Lus10038739.g ID=Lus10038739.BGIv1.0 annot-version=v1.0 MMILRNVVVVMLFVTVIAPIALYTDRFAAFAPSSTRIDFLEDVTSFTRPADSGRLNVLPQESSTVLKEPIGVVYTTNLTQSSPDGVAASDAGNQNSIAAD LQSQDTREHKYARVLSATDEHDQSQPDAVIKRVTDTTNAKHESRNDGTDTKPKDPKSSTSNRVAHNASQELLERQAAGNYGKTTEKDHRKAKSGKQTDQT AAMSDARVRQMRDQLIRAKVFLSLPATNNNPHYTRDLRMRVKEVTRVLGEATKDSELQKNAVEKMKAMEQALTKGKQIQDDCATGVKKLRAMLHSTEEQL RVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYSLNTSQQQFPNQEKLEDPLLYHYALFSDNVLAASVVVNSTITHAKDPSKHVFHIVTDRLNYAAMRM WFLVNPPGKGTIQVQNIEEFTWLNASYSPVLKQLGSPSMIDYYFRAHRANSDPNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFVDDDIVVQKDLAALW ALDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFQPHACGWAYGMNVFDLDQWRRKNITEVYHKWQKLNHDRTLWKLGTLPPGLITFWKQTHPLDRS WHVLGLGYNPSMNQKDIERAAVIHYNGNMKPWLEIGIPKYRGYWEKYVDYEHVYLRECNINP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10038739 [exp]	0	1
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10018902 [exp]	5.0	0.8709
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10007538 [exp]	5.3	0.8479
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10014185 [exp]	6.9	0.8214
AT5G09890			Protein kinase family protein ...		Lus10042650 [exp]	7.0	0.8089
AT3G42050			vacuolar ATP synthase subunit ...		Lus10005658 [exp]	7.4	0.8310
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10028597 [exp]	13.5	0.8346
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10010295 [exp]	16.0	0.8081
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	20.8	0.8330
AT4G19420			Pectinacetylesterase family pr...		Lus10034767 [exp]	22.4	0.7639
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10037321 [exp]	28.3	0.7987

Compare expression of checked genes

Lus10038739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.