Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44150 387 / 1e-132 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) AT3G59960 300 / 9e-99 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT4G30860 190 / 1e-54 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT1G77300 134 / 2e-33 ASHH2, CCR1, SDG8, EFS, LAZ2 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) AT1G76710 111 / 3e-26 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT5G42400 84 / 1e-16 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT2G23740 81 / 6e-16 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT1G05830 78 / 7e-15 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT2G31650 76 / 2e-14 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT2G35160 75 / 4e-14 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039118 [exp] 678 / 0 AT2G44150 434 / 1e-152 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10003777 [exp] 189 / 1e-53 AT4G30860 451 / 9e-154 ASH1-related 3, SET domain group 4 (.1) Lus10016600 [exp] 130 / 1e-32 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10000967 [exp] 127 / 5e-31 AT1G77300 748 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10028662 [exp] 127 / 8e-31 AT1G77300 774 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10022483 [exp] 86 / 2e-17 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10016788 [exp] 86 / 2e-17 AT2G23740 1325 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10025172 [exp] 85 / 4e-17 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10012626 [exp] 85 / 4e-17 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G000400 [exp] 461 / 1e-161 AT2G44150 471 / 5e-167 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.007G147200 [exp] 455 / 4e-159 AT2G44150 477 / 2e-169 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.018G102100 [exp] 189 / 6e-54 AT4G30860 585 / 0.0 ASH1-related 3, SET domain group 4 (.1) Potri.005G182100 [exp] 130 / 7e-32 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.002G079100 [exp] 127 / 5e-31 AT1G77300 820 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.005G195400 [exp] 120 / 3e-29 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.007G033000 [exp] 89 / 2e-18 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.002G001000 [exp] 85 / 3e-17 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G260100 [exp] 84 / 5e-17 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G129800 [exp] 82 / 4e-16 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10038740 pacid=23150675 polypeptide=Lus10038740 locus=Lus10038740.g ID=Lus10038740.BGIv1.0 annot-version=v1.0 ATGGTGAATGAATGTCCAGGTTATAGCACGGCTGGCTGGCTGGCTGGCGGGGAGGTGTTCGTACATGAGATGCACATGAAGGTGCCAGGGAGGAGTGGGC ACCACTTCATTAGCTGGCTCTCTATAGCTGTTAACTTAACGCCGTCTCTTTTTCCTTTTCCTAATATGAAATTTCCAATTCTTGGTCAGAACGGTGACGG TGGCCGGTTCAGACAAGCGTTCAATGTATTGGTGGAGCAACTAGGAGGAACTCCGGTTGAATTTGAACTTCCGGAGTGGTTGCTTAACAAAGCAAAGCCT CCTATGCCTTACACCTTCATCAAACGCAGTATCCTATCGTCATCAATCAATCTCTTTTACTTTGAAATTGATTTTTGTGTGTTTCAACTTATCCTTGTCC CATTTTGTTATCCTGACCACCCTGAAGACATATATCTTACCAAGCGGGTTAAAAGGCGGCTTGAGGATGATGGCATATTCTGCTCCTGCAATGCATCGCC TGGTTCTTCTGGTGTCTGCGGTAGAGATTGCCATTGCGGGATGTTGCTGTCCAGTTGCTCCTCGGGTTGCAAATGTGGGGAATCTTGTCTCAACAAACCA TTTCACCAACGGCCTATGAAGAAGATGAAAATGATACAGACTGATAAATGTGGAGTTGGGATTGTGGCTGATGAAGAAATAAATCAAGGAGAGTTTGTGA TAGAGTATGTCGGAGAAGTTATTGATGATAAGACATGTGAAGAGCGACTATGGAACATGAAGCATCGCGGGGAAACAAACTTTTATCTGTGTGAAATTAA CCGAAACATGGTTATTGATGCAACATACAAGGGAAACAAGTCAAGATACATAAACCATAGTTGCTGTCCTAATACCGAGATGCAGAAATGGATAATTGAC GGGGAAACAAGAATTGGAATATTTGCAACTCGTGACATAAAAAAGGGCGAGCATCTGACTTATGATTATCATCGTTCAGTTCATTCTAACAAAGTCAGCA GGTTTGTACAATTTGGCGCAGATCAAGACTGCCACTGTGGGGCTGCCGACTGCAGGCTGAAGCTAGGTGTTAAGCCAACCAAGGCTAAGTTGTCGTCCGA TGCAGCGTTACACCTGGTCACATGCCAGGTTGCAGTCTCCTCTCCCCGGATTAAAGCGATTCTGTCAGGGAAAAATGGTCTTCAAAATGGAAGAGTACAT AAAGGGAATTCAGGGTGTGCTAATGATAACCGGCAGTCTTACCATAGTTTCATCGGCAAAGTGATAAGAATAGTCTACTCCAAGAATGAAAGTTTCGGGA TTATTAGACAGTTTGACAAGTATTCGAGAAAACACAAGATCATGCTCGAGGACGGTACTGTCATATTTCTCGACCTTAACAAAGTAGAATGGGAAATCTG TGATTCTGACTCCAGGTGA
AA sequence Show only first row Show all	>Lus10038740 pacid=23150675 polypeptide=Lus10038740 locus=Lus10038740.g ID=Lus10038740.BGIv1.0 annot-version=v1.0 MVNECPGYSTAGWLAGGEVFVHEMHMKVPGRSGHHFISWLSIAVNLTPSLFPFPNMKFPILGQNGDGGRFRQAFNVLVEQLGGTPVEFELPEWLLNKAKP PMPYTFIKRSILSSSINLFYFEIDFCVFQLILVPFCYPDHPEDIYLTKRVKRRLEDDGIFCSCNASPGSSGVCGRDCHCGMLLSSCSSGCKCGESCLNKP FHQRPMKKMKMIQTDKCGVGIVADEEINQGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRNMVIDATYKGNKSRYINHSCCPNTEMQKWIID GETRIGIFATRDIKKGEHLTYDYHRSVHSNKVSRFVQFGADQDCHCGAADCRLKLGVKPTKAKLSSDAALHLVTCQVAVSSPRIKAILSGKNGLQNGRVH KGNSGCANDNRQSYHSFIGKVIRIVYSKNESFGIIRQFDKYSRKHKIMLEDGTVIFLDLNKVEWEICDSDSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Lus10038740 [exp]	0	1
AT5G41140			Myosin heavy chain-related pro...		Lus10024517 [exp]	70.7	0.6311
AT2G47210	MYB		myb-like transcription factor ...		Lus10003470 [exp]	91.4	0.6045
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10033148 [exp]	112.8	0.5983
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10016686 [exp]	162.8	0.5671
AT2G18460		LCV3	like COV 3 (.1)		Lus10026023 [exp]	260.6	0.5549

Compare expression of checked genes

Lus10038740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.