Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24000 736 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 499 / 4e-167 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G13230 488 / 1e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 484 / 1e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 479 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 477 / 4e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 482 / 8e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 476 / 8e-160 MEF22 mitochondrial editing factor 22 (.1) AT5G16860 481 / 1e-159 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 466 / 1e-156 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039117 [exp] 1269 / 0 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 497 / 6e-166 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006123 [exp] 489 / 7e-165 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040504 [exp] 485 / 8e-164 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038839 [exp] 481 / 7e-163 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 481 / 2e-162 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 488 / 4e-162 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000706 [exp] 486 / 5e-162 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10024876 [exp] 486 / 1e-161 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G001200 [exp] 837 / 0 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 515 / 2e-173 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 511 / 4e-170 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 498 / 1e-168 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 500 / 1e-167 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 497 / 4e-167 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 489 / 5e-165 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 494 / 1e-164 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 490 / 2e-164 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.016G051300 [exp] 486 / 2e-164 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10038741 pacid=23150514 polypeptide=Lus10038741 locus=Lus10038741.g ID=Lus10038741.BGIv1.0 annot-version=v1.0 ATGACGATTATGGCGATCGTCATTCACATAGGTCGTCGCCATCTTCGTTTCCGAAAGTTCAATCCTTGTTTCTCTATACCACGTTCATTTCTTTCAACCA CCTCCTCATTACTCCCCACTTCCACTCATCGTCATTGTCATCGTCCAGAATTTGATCATCTGCTTCGTCAGGAACAGGTCTCATGCGCCATCATTCAGGA TCAGCACCTTCTCCGCAAGAGCCTCCAATCGTCAGGAACCGGTCTCCATGTTCTGGACCTCATCGACCGTGGATCTCTCGAACCGGACCGCTCTCTCTAC CATGCCCTGCTCAAGAAGTGCACCTGTCTCGGCAGGCTCGAAGAAGCAAAGATCGTGCATAGCCACTTGCTTAATTCCCGGTTCAGTCGCGACTCCGTTC TCTTCACCACTCTGATTAATCTCTACTCGAAATGCGGCTCCCTGGACGAAGCATGCCAGCTGCTCGACGAAATGCCTGACAGTCGAGATATCGTAGCTTG GACTGCACTCATTGCTGGATACGCTCAACGCGATCGTCCTCGAGACGCTCTTGTTATGTTCCGACGAATGCTAGCCCTCGGCTTGATCCCCAACGAGTTT ACATTGTCCAGCGTTTTAAAGGCTGCTTCTGGCCTCGGTCTTTCTGGTCATGCTAATGGTATGCAACTCCATTCGTTTGCTTTGAAGCTAGGTTATGTAT CGGATGCTTTCGTCGGCAGTGCTCTGGTTGACATGTATGCCAGGTGTGAACGAATGGAAGAAGCCGAGGTTATATTTCATGGTCTAGTTAGCAGAAATGA AGTGTCTTGGAATGCTTTGATTGCTGCCCATGCTAGAAAGGGCGAGGCAGAGCATGCTTTTCGGTTATTCTCTAACATGCTGCGGGAAAATGTTCAGCCA ACTCAATTTACTTATTCCAGTATTCTTAATGCCTGTGCTGTCGTTGGTTCTTTGGAGCAAGGCAAGTGGATCCACGCCGTTTTGATCAAGTCTCAAGCAA AGCTGGTTGGTTTCGTTGGTAACACTTTGCTGGACATGTATGCTAAATCAGGAAGCCTCGAGGAAGCGATGAAAGTTTTCGATAGGATGTTGAAACGAGA TATTGTTTCCTGGAATACATTGCTGAAAGGTTATGCACAGCATGGACTTGGAAACTCAGCCTTGCGAATTTTCGAAAAGATGTTGAAGATAGGAATTGCT CCTAATGAAATAACTTTCCTGTGTGTTCTTACTGCTTGTAGCCATGCGGGACTTGTGGATGAAGGTTTCGATATTTTTGGTCAGATGAAGAAGTATAACA TAGAGCCTGGAGTTTCGCATTATGTGACAATCGTTGATCTTTTCGGTCGAGCTGGCCGGCTCGACCAAGCTGAGAATTTCATCAGGGGAATGCCGATTGA GCCTACTGCTGCTGTGTGGGGAGCATTGCTTGGTGCTTGTAGGATGCATAAGAAGACGGAACTCGGTACTTATGCTGCCGAGCGTATTTTCGAACTCGAT CCTTACGATTCCGGGCCCCATATGCTGCTGTATAACATTTACGCCTCTGCTAGTAGATGGAGCGAAGCAACTAAAGTTAGAAAGATTATGAAAGAGAGTG GTGTGAAAAAGGAACCAGCTTGCAGTTGGGTAGAGATTGAGAATGAGGTCCATGTGTTTGTTGCAGATGATGATTCCCACCCGGATAGCGAAGAGATTCA TGCAATGTGGGAGAATACCAGGTTGAAGATTAAGCAGATTGGATACAAACCAGATGCTAACCATGTACTTTTGTGCTTGGACCAAAGAGAGAGGGAAGTG AAGTTGCAGCGCCATAGTGAGAAGCTTGCTCTAGCATTTGCGCTTCTTAAGACACCTCCTAGATCCACAATCCGCATAAAGAAGAACATCAGGGTCTGTG GAGATTGTCATTCCGCATTCAAGCTCGTTTCGAAGGTAGTGAACAGAGAGATTATTGTCAGAGATATCAACCGGTTTCATCACTTTCGAGATGGTTCTTG CTCCTGTGGGGATTACTGGTGA
AA sequence Show only first row Show all	>Lus10038741 pacid=23150514 polypeptide=Lus10038741 locus=Lus10038741.g ID=Lus10038741.BGIv1.0 annot-version=v1.0 MTIMAIVIHIGRRHLRFRKFNPCFSIPRSFLSTTSSLLPTSTHRHCHRPEFDHLLRQEQVSCAIIQDQHLLRKSLQSSGTGLHVLDLIDRGSLEPDRSLY HALLKKCTCLGRLEEAKIVHSHLLNSRFSRDSVLFTTLINLYSKCGSLDEACQLLDEMPDSRDIVAWTALIAGYAQRDRPRDALVMFRRMLALGLIPNEF TLSSVLKAASGLGLSGHANGMQLHSFALKLGYVSDAFVGSALVDMYARCERMEEAEVIFHGLVSRNEVSWNALIAAHARKGEAEHAFRLFSNMLRENVQP TQFTYSSILNACAVVGSLEQGKWIHAVLIKSQAKLVGFVGNTLLDMYAKSGSLEEAMKVFDRMLKRDIVSWNTLLKGYAQHGLGNSALRIFEKMLKIGIA PNEITFLCVLTACSHAGLVDEGFDIFGQMKKYNIEPGVSHYVTIVDLFGRAGRLDQAENFIRGMPIEPTAAVWGALLGACRMHKKTELGTYAAERIFELD PYDSGPHMLLYNIYASASRWSEATKVRKIMKESGVKKEPACSWVEIENEVHVFVADDDSHPDSEEIHAMWENTRLKIKQIGYKPDANHVLLCLDQREREV KLQRHSEKLALAFALLKTPPRSTIRIKKNIRVCGDCHSAFKLVSKVVNREIIVRDINRFHHFRDGSCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10038741 [exp]	0	1
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10040997 [exp]	1.0	0.8754
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10013319 [exp]	1.4	0.8540
AT1G09190			Tetratricopeptide repeat (TPR)...		Lus10029853 [exp]	1.7	0.8488
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10019278 [exp]	2.8	0.8478
AT4G15820			unknown protein		Lus10034169 [exp]	3.2	0.7996
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10016509 [exp]	3.9	0.8339
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	4.2	0.8273
AT4G19191			Tetratricopeptide repeat (TPR)...		Lus10031028 [exp]	5.2	0.8059
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10000020 [exp]	5.7	0.7986
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014026 [exp]	6.2	0.7735

Compare expression of checked genes

Lus10038741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.