Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13300 670 / 0 VCS VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G13290 649 / 0 VCR varicose-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039116 [exp] 2092 / 0 AT3G13290 1233 / 0.0 varicose-related (.1) Lus10038767 [exp] 610 / 0 AT3G13300 528 / 3e-175 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039096 [exp] 209 / 2e-59 AT3G13290 131 / 2e-33 varicose-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G166400 [exp] 1055 / 0 AT3G13300 1203 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G001400 [exp] 1016 / 0 AT3G13290 1170 / 0.0 varicose-related (.1) Potri.016G002100 [exp] 749 / 0 AT3G13300 714 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G469500 [exp] 690 / 0 AT3G13300 1236 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10038742 pacid=23150611 polypeptide=Lus10038742 locus=Lus10038742.g ID=Lus10038742.BGIv1.0 annot-version=v1.0 ATGGCGTCGGCGCCTTCCGGTAATCCGTACCAACACCCCACCGCAGAAGGAAGTGGCGGATTAGGCAGTGCTGGCAGCGGAGGTTTTGACATCAACAAGT TGTTCAAGCCTTCGTCAAACCCTATGGCCATGAACATGAACGCGATGCCTCCACCGCCTCAGCATCAGCAGCAGTTGCAGAGTGCAGTTAGCGGTGGAGC TGCTTCGCCTTCTTTCGCTCTACCATCCTCGGGTCCTCCTCAGTATCTCACGCCGTCCTCTTCTTACCCTCCGCCAGCTGGCCCGTACAATCCTTATCAA CAACATCAGTTCATCTCGCCGTATCCTCCTCCACAGCCGACGCCCCAGCTTCAGCAGCCTCATCAGAACCAGTTCCTCGCAAACCTCCAGCAGCAGCAGC AGCTTCACAGCAGGCTTAATCAGCAGCCGATTTCGTCGTCGTATCCGTCTCCGGCGTCGTCTGTTGTCCCGTCGCCGCCCTTCTCCCCTACTCCCAATCC CGGCGGTGCTGTCCTGATGGATATCTTGAACGGTCAAGGTCAACAGCAGATGCAGCAGCAGCAGCATCCGGTTTCTGCGAACCTTACTCTGCCATTCTCT TCAGCTGGTGCATCGACTGTTCCTACTGCTCCTCATGTCGCTTTAGCGTCCCCAACCCAGCTGCCGCCTGGGGCTTCTCCCGTGAGGTTGCTCAGCACAA AGCTTCCCAAGGGTCGCCACCTGATCGGCAGTCAAGTTGTGTACGATATTGATACGAGGATGCATGGTGAGGTGCAGCCTCAACTTGAATGTACTCCCAT TACTAAGTATCAATCGGATCCTGGACTTGTGCTTGGCCGGCAGATTGCGGTTAACAGGAACTATATTTGCTATGGTCTGAAGCCTGGGTCAATTCGCATT CTCAACATCAATACGGCCTTAAGATCCTTGCTAAGGGGTCATAATAAGAAAGTGACAGACATGGCCTTTTTTGCTGAAGATGTTCACTTACTTGCCAGTG CATGTGTTGAGGGACGGGTTTTCATTTGGAAGATCGATGAGGGTTCGGATGAAGAAGAAAAGCCTAAAATATTTGAACGGATTACCCTCGCACTTCATAT AGTTGTTGATGGAGAATCTGTTCATCCATGTGTCTGCTGGCATCCTCACAAACAAGAAATCCTGATGGTTGCGATTGGAAATAGTGTACTAAAGATTGAC ACTATCAAAGTTGGGAAGAACGGCGGGTTTTCGGGAGAGAAACCTTTAAGCTGTTCCATAAATAACTTGATTGATGGGGTGCAATTTGTTGGTAAGCATG ACGGCGAAGTTACTGGGCTTTCAATGTGCCAGTGGATGACTACCCGTTTGGCCTCAGCTTCAAGTGATGGAACGGTCAAAATTTGGGATGATCGCAAGGC AGTACCACTTTCAATTCTAAGACCACACGATGGTAGACCTGTCAGCTCTGTGTCATTCTTGACTGCTTCACATCGACCAGACCATATCATCCTTATTACT GGGATGCTCAAACAAGTCTATCTGTATGCTGTTCACATTGAGTATGGTTCATGTCCAGCTGCAACCCGCATGGATTACATAGCTGAGTTCACAGTTACAA TGCCGATTCTGAGTCTGACTGGTACTAGTGATAGTTTACTGAATGGTGAACACATTGTGCAAGTGTACTGTGTTCAGACAACGGCTATCCAGCAGTATGC ATTGGACTTGTTGCAGTGTCTGCCACCTCCCATAGAAAATGTTGAGTTGGAGAAATCAGAATCTAATGCTTCTCGTGCTCTCGATGCTGTAGTGTCTAAT GCTTCTGCTGCAACTGAGTCGTCTCTTGGAAATAAAACCATTGAGATATCTGCGGGTAGCACAACTTCCGCTCAGCCTCCAATTTCAAGCAATGTAGAGA GTACTTCAATTGCATCTCATCACCAGAACTTAGGACCTCCTAAAGATTCCAATTTGCCTATTGTGCCTTCTTCAGGTGTAGAGATTAAGACCACAACTAT GGTCCATAGCAATGCTGAAAACATGAGCAAGTTGACGCCTCCTCCTTCAAGTCCTCGTCCTTCTTCAAAAATGTCAGGTCTTGAGAACTCATCCAACAGT GTAGATACTGGCTTACATACCACTGACCATGGTGATGAACATCCCATGGCAGACTATTTGCTTAGCCACAGACCCGATATGGTGAAGGATAATGTGCCTG AGAACTCTATGCTACCTGAAAACACAAGGAAGGGTGAAAAAAGCATTGCACAAACTGATATGTCAATGGTTGCAGAGCATCCCACAGTTTATAAGCACCC AACACATTTAGTCACTCCATCTGAGATACTGTCGAGGGCTCCATCCACCGACAGTCCCCTTGTTTCTCAAGGTATGGCTAGAGGAGAACCTAAGGTTCAA GATGTGATTGTCAACAATGATACAGAAAGTGTTGAAGTTGTAGATGTTAAAGTAGTTGAGATGGGTTCCAAACAAAATAGTGGATTTGACTTGAATAGAG AATCCCACATCACTGTCCCTGAGAGAAAGGAAAAGTCTTTCTATTCTCAGGCATCTGATCTTAACCTTCAGATGGCCAGGGATACTGAGATGGAATCATA TGCTGCAGTGGTAGCTAGGCAAGCTAATGATGATACAGTCACCAAGTTACCTGACAAACCTGCGAGCAATACTGAAGATGGCGAGCGAGATGGTTCAAAA GATGGAACACAAAGAGTTAGTGAACCAGAAACTCAGGCAGTTCTGCAGTCCCCAGCTCCAGCTTCGAAAGGCAAAAAACAGAAGGGAAAAAACTCTCAAG CATCTGCTATGGCAGCAACCACAAGTCCTTTTAATTCCACAGATTCATCAAACGAACCAGGCTGCAGTTCTGGCCCTCATCCTAATGATGCTTCCGTCTC CCAGATATCAGCCCTGCAAGATACACTTGACCAGCTGCTGAATATGCAGAAAGAGATGCAAAAACAGATGAACTCGATGATTTCAGTTCCTGTTTCAAAG GAAGGCAAAAGACTAGAGGCATCCTTGGGCCGGAGTGTAGAAAAAGTTGTAAAAGCAAACACAGATGCTATGTGGGCTCGGTTCCAAGAAGAAAATGCTA AACGTGAGAAGTTAGAACGAGATCGTAGCCAGCAATTGACAAATTTGTTGACAAATTTTATAAACAAGGACTTCCCAAGTGCCTTGGAGAAGGTTCTGAA GAAGGAAGTAACTGCTATTGGACCTGCTGTGGCCCGTGCTATATCTCCTGTTCTTGAGAAGACCATATTATCAGCTATTGCAGAGTCATTCCAGAAAGGG GTCGGGGATAAGGCGGTGGGGCAATTAGAAAGGTCTGTTAGTTCCAAAATGGAAGCAACCGTGGCAAGGCAAATCCAGTCACAGTTTCAAACTTCTGGAA AACAGGCTCTTCAGGATTCCTTGAGATCTAGCTTGGAAGCTTCAATAATTCCTGCATTTGAGATGGCATGCAAAGCTATGTTCGACAAAGTTGATGCTAC ATTTCAGAAGGGACTTGCGAGCCATATAAGTTCTGCTCAGCAGCAATTTGATTCAACTCATTCTCCTCTTGCTGTCGCTCTAAGGGATGCCATCAATTCA GCATCTTCAATCACTCAAACGTTAAGCGGAGAGCTGGCTGATGGTCAACGCAAGATCTTAGCTTTTGCGAATTCTAAAGCCATTCAGCCATCTGCACTAA GTAATGGACCACTTTCAAGTTTGCACGAGATGACCGAGGCCCCACTAGACCCTACAAAGGAACTATCCAGATTGGTGGCCGAGGGAAAATATGACGATGC ATTCACTAAAGCTCTTCATAGAAGTGATGTATCGATTGTTTCCTGGCTATGCTCACAGGTTGATCTGAAGGGTATGTTGTCCATGTCGCCACTGCCATTA AGCCAAGGAGTGGTGCTAGCTCTGTTGCAACAACTGGCCTGTGATATGATCAACGACACCAGTAAGAAACTATCGTGGATGTCGGATATCGTGATAGCCA TTAACCCTTCGGATCCGATGATATCAATGCACGTGAGACCCATATTCGACCAGGTGTACCAGATACTGAACCACCACAGGAATCTGCCGACGTCCTCAGC CGGCGATTTATCCCAAATTCGGATTCTGATGTACGTCATAAACTCTGTGCTGATGAACTGTAAATGA
AA sequence Show only first row Show all	>Lus10038742 pacid=23150611 polypeptide=Lus10038742 locus=Lus10038742.g ID=Lus10038742.BGIv1.0 annot-version=v1.0 MASAPSGNPYQHPTAEGSGGLGSAGSGGFDINKLFKPSSNPMAMNMNAMPPPPQHQQQLQSAVSGGAASPSFALPSSGPPQYLTPSSSYPPPAGPYNPYQ QHQFISPYPPPQPTPQLQQPHQNQFLANLQQQQQLHSRLNQQPISSSYPSPASSVVPSPPFSPTPNPGGAVLMDILNGQGQQQMQQQQHPVSANLTLPFS SAGASTVPTAPHVALASPTQLPPGASPVRLLSTKLPKGRHLIGSQVVYDIDTRMHGEVQPQLECTPITKYQSDPGLVLGRQIAVNRNYICYGLKPGSIRI LNINTALRSLLRGHNKKVTDMAFFAEDVHLLASACVEGRVFIWKIDEGSDEEEKPKIFERITLALHIVVDGESVHPCVCWHPHKQEILMVAIGNSVLKID TIKVGKNGGFSGEKPLSCSINNLIDGVQFVGKHDGEVTGLSMCQWMTTRLASASSDGTVKIWDDRKAVPLSILRPHDGRPVSSVSFLTASHRPDHIILIT GMLKQVYLYAVHIEYGSCPAATRMDYIAEFTVTMPILSLTGTSDSLLNGEHIVQVYCVQTTAIQQYALDLLQCLPPPIENVELEKSESNASRALDAVVSN ASAATESSLGNKTIEISAGSTTSAQPPISSNVESTSIASHHQNLGPPKDSNLPIVPSSGVEIKTTTMVHSNAENMSKLTPPPSSPRPSSKMSGLENSSNS VDTGLHTTDHGDEHPMADYLLSHRPDMVKDNVPENSMLPENTRKGEKSIAQTDMSMVAEHPTVYKHPTHLVTPSEILSRAPSTDSPLVSQGMARGEPKVQ DVIVNNDTESVEVVDVKVVEMGSKQNSGFDLNRESHITVPERKEKSFYSQASDLNLQMARDTEMESYAAVVARQANDDTVTKLPDKPASNTEDGERDGSK DGTQRVSEPETQAVLQSPAPASKGKKQKGKNSQASAMAATTSPFNSTDSSNEPGCSSGPHPNDASVSQISALQDTLDQLLNMQKEMQKQMNSMISVPVSK EGKRLEASLGRSVEKVVKANTDAMWARFQEENAKREKLERDRSQQLTNLLTNFINKDFPSALEKVLKKEVTAIGPAVARAISPVLEKTILSAIAESFQKG VGDKAVGQLERSVSSKMEATVARQIQSQFQTSGKQALQDSLRSSLEASIIPAFEMACKAMFDKVDATFQKGLASHISSAQQQFDSTHSPLAVALRDAINS ASSITQTLSGELADGQRKILAFANSKAIQPSALSNGPLSSLHEMTEAPLDPTKELSRLVAEGKYDDAFTKALHRSDVSIVSWLCSQVDLKGMLSMSPLPL SQGVVLALLQQLACDMINDTSKKLSWMSDIVIAINPSDPMISMHVRPIFDQVYQILNHHRNLPTSSAGDLSQIRILMYVINSVLMNCK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038742 [exp]	0	1
AT5G16210			HEAT repeat-containing protein...		Lus10009154 [exp]	1.4	0.9422
AT1G50410			SNF2 domain-containing protein...		Lus10013452 [exp]	2.4	0.9362
AT5G23430			Transducin/WD40 repeat-like su...		Lus10041007 [exp]	3.0	0.9344
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10030162 [exp]	3.2	0.9263
AT5G43310			COP1-interacting protein-relat...		Lus10011809 [exp]	3.5	0.9196
AT1G11160			Transducin/WD40 repeat-like su...		Lus10018458 [exp]	4.5	0.9321
AT5G65950			unknown protein		Lus10041289 [exp]	5.1	0.9079
AT1G60070			Adaptor protein complex AP-1, ...		Lus10030848 [exp]	6.9	0.9319
AT1G73450			Protein kinase superfamily pro...		Lus10042297 [exp]	7.2	0.9195
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10042843 [exp]	7.3	0.9269

Compare expression of checked genes

Lus10038742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.