Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17170 387 / 9e-139 ATRAB-B1B, AT-RAB2, AtRABB1c, AtRab2A ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) AT4G35860 355 / 3e-126 ATGB2, AtRABB1b, Atrab2C GTP-binding 2 (.1.2) AT4G17160 331 / 9e-117 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1) AT5G60860 195 / 4e-63 AtRABA1f RAB GTPase homolog A1F (.1) AT1G16920 194 / 6e-63 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT5G45750 194 / 8e-63 AtRABA1c RAB GTPase homolog A1C (.1) AT3G12160 194 / 2e-62 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT4G18430 192 / 4e-62 AtRABA1e RAB GTPase homolog A1E (.1) AT5G47960 192 / 4e-62 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT2G33870 192 / 7e-62 ArRABA1h RAB GTPase homolog A1H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025184 [exp] 363 / 3e-129 AT4G17170 389 / 1e-139 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Lus10039114 [exp] 362 / 4e-129 AT4G17170 407 / 5e-147 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Lus10016066 [exp] 341 / 2e-120 AT4G17170 369 / 3e-131 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Lus10020746 [exp] 197 / 6e-64 AT1G06400 375 / 3e-134 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10015297 [exp] 196 / 2e-63 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10029789 [exp] 195 / 4e-63 AT1G06400 373 / 3e-133 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10002178 [exp] 195 / 5e-63 AT5G60860 423 / 4e-153 RAB GTPase homolog A1F (.1) Lus10025432 [exp] 195 / 6e-63 AT5G60860 422 / 1e-152 RAB GTPase homolog A1F (.1) Lus10017679 [exp] 194 / 1e-62 AT5G60860 426 / 4e-154 RAB GTPase homolog A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G002200 [exp] 389 / 1e-139 AT4G17170 394 / 6e-142 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Potri.009G159600 [exp] 352 / 6e-125 AT4G35860 412 / 7e-149 GTP-binding 2 (.1.2) Potri.001G270100 [exp] 196 / 1e-63 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.011G061300 [exp] 196 / 2e-63 AT5G60860 416 / 5e-150 RAB GTPase homolog A1F (.1) Potri.011G070300 [exp] 196 / 3e-63 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.004G061000 [exp] 193 / 3e-62 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1) Potri.001G374000 [exp] 192 / 5e-62 AT5G60860 417 / 1e-150 RAB GTPase homolog A1F (.1) Potri.007G096000 [exp] 192 / 6e-62 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.013G123600 [exp] 192 / 8e-62 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.019G092500 [exp] 191 / 1e-61 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10038744 pacid=23150617 polypeptide=Lus10038744 locus=Lus10038744.g ID=Lus10038744.BGIv1.0 annot-version=v1.0 ATGTCGTACGCTTATCTCTTCAAGTATATCATCATCGGCGACACCGGAGTTGGGAAATCGTGTCTGCTGCTTCAGTTCACTGACAAGAGGTTCCAGCCAG TCCATGACCTTACCATCGGCGTGGAATTCGGTGCTCGGATGATCACCATTGACAACAAGCCCATCAAGCTCCAGATTTGGGACACGGCTGGTCAGGAATC CTTCAGATCAATCACTAGGTCTTATTACCGAGGAGCTGCTGGTGCTCTGCTCGTCTATGATATCACAAGGCGGGAAACTTTTAATCATCTGGCGAGTTGG TTAGAGGATGCTAGACAGCACGCCAATGCAAACATGACAATTATGCTCATCGGTAACAAGTCTGATCTTGCTCACCGGAGGGCTGTGAGCACCGAGGAAG GGGAGCAGTTTGCTAAGGAGCATGGGTTGATCTTCATGGAGGCTTCTGCAAAAACGGCTCAGAACGTTGAGGAGGCTTTTATTAAAACAGCTGCAACCAT CTACAAGAAGATTCAAGATGGCGTCTTTGATGTGTCAAATGAGTCTTATGGGATAAAAGTTGGATACGGTGGAATTCCCGGACCGTCTGGAGGAAGAGAT GGATCTACTTCACAGTCTGGTGGATGCTGCAGTTGA
AA sequence Show only first row Show all	>Lus10038744 pacid=23150617 polypeptide=Lus10038744 locus=Lus10038744.g ID=Lus10038744.BGIv1.0 annot-version=v1.0 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW LEDARQHANANMTIMLIGNKSDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRD GSTSQSGGCCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	0	1
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018287 [exp]	1.4	0.8985
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10034189 [exp]	1.4	0.9054
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023338 [exp]	3.0	0.8659
AT2G35680			Phosphotyrosine protein phosph...		Lus10004376 [exp]	3.0	0.8866
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10001021 [exp]	4.5	0.8852
AT5G32440			Ubiquitin system component Cue...		Lus10039988 [exp]	4.7	0.8653
AT5G53140			Protein phosphatase 2C family ...		Lus10039341 [exp]	6.0	0.8638
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10005206 [exp]	6.2	0.8629
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	6.9	0.8827
AT5G47310			PPPDE putative thiol peptidase...		Lus10004372 [exp]	7.1	0.8226

Compare expression of checked genes

Lus10038744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.